galaxy-config


Namegalaxy-config JSON
Version 24.0.0 PyPI version JSON
download
home_pagehttps://github.com/galaxyproject/galaxy
SummaryGalaxy configuration
upload_time2024-04-03 02:47:20
maintainerNone
docs_urlNone
authorGalaxy Project and Community
requires_python>=3.8
licenseAFL
keywords galaxy
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage
            
.. image:: https://badge.fury.io/py/galaxy-config.svg
   :target: https://pypi.org/project/galaxy-config/


Overview
--------

The Galaxy_ config module.

* Code: https://github.com/galaxyproject/galaxy

.. _Galaxy: http://galaxyproject.org/

History
-------

.. to_doc

-------------------
24.0.0 (2024-04-02)
-------------------


=========
Bug fixes
=========

* Follow-up on #17274 and #17262 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17302 <https://github.com/galaxyproject/galaxy/pull/17302>`_
* Fix minor oidc_backends_config comment bug by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17385 <https://github.com/galaxyproject/galaxy/pull/17385>`_

============
Enhancements
============

* Add harmonize collections tool (or whatever other name) by `@lldelisle <https://github.com/lldelisle>`_ in `#16662 <https://github.com/galaxyproject/galaxy/pull/16662>`_
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Support for OIDC API Auth and OIDC integration tests by `@nuwang <https://github.com/nuwang>`_ in `#16977 <https://github.com/galaxyproject/galaxy/pull/16977>`_
* Add support for (fast5.tar).xz binary compressed files by `@tuncK <https://github.com/tuncK>`_ in `#17106 <https://github.com/galaxyproject/galaxy/pull/17106>`_
* Add a3m datatype by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#17217 <https://github.com/galaxyproject/galaxy/pull/17217>`_
* Convert sample object store configuration to YAML and support configuring inline by `@natefoo <https://github.com/natefoo>`_ in `#17222 <https://github.com/galaxyproject/galaxy/pull/17222>`_
* Allow job files to consume TUS uploads by `@jmchilton <https://github.com/jmchilton>`_ in `#17242 <https://github.com/galaxyproject/galaxy/pull/17242>`_
* Add OIDC backend configuration schema and validation by `@uwwint <https://github.com/uwwint>`_ in `#17274 <https://github.com/galaxyproject/galaxy/pull/17274>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Allow using tool data bundles as inputs to reference data select parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17435 <https://github.com/galaxyproject/galaxy/pull/17435>`_
* Use short link for TPV shared database by `@nuwang <https://github.com/nuwang>`_ in `#17467 <https://github.com/galaxyproject/galaxy/pull/17467>`_
* Feature SBOL datatypes by `@guillaume-gricourt <https://github.com/guillaume-gricourt>`_ in `#17482 <https://github.com/galaxyproject/galaxy/pull/17482>`_
* Add documentation on how to use vault keys in file sources by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17498 <https://github.com/galaxyproject/galaxy/pull/17498>`_
* add npy datatype by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#17517 <https://github.com/galaxyproject/galaxy/pull/17517>`_
* Enhance Avivator display app to support regular Tiffs by `@davelopez <https://github.com/davelopez>`_ in `#17554 <https://github.com/galaxyproject/galaxy/pull/17554>`_
* Allow admin to sharpen language about selected object stores. by `@jmchilton <https://github.com/jmchilton>`_ in `#17806 <https://github.com/galaxyproject/galaxy/pull/17806>`_

-------------------
23.2.1 (2024-02-21)
-------------------


=========
Bug fixes
=========

* pin fs.dropboxfs to >=1 by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16451 <https://github.com/galaxyproject/galaxy/pull/16451>`_
* MINERVA display application: enable cors, add for tabular by `@hexylena <https://github.com/hexylena>`_ in `#16737 <https://github.com/galaxyproject/galaxy/pull/16737>`_
* chore: fix typos by `@afuetterer <https://github.com/afuetterer>`_ in `#16851 <https://github.com/galaxyproject/galaxy/pull/16851>`_
* Add back 1.1.0 version of Filtering1 tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16883 <https://github.com/galaxyproject/galaxy/pull/16883>`_
* Set webdav file source to use temp files by default by `@davelopez <https://github.com/davelopez>`_ in `#17388 <https://github.com/galaxyproject/galaxy/pull/17388>`_

============
Enhancements
============

* Update cellxgene interactive tool to 1.1.1 by `@pcm32 <https://github.com/pcm32>`_ in `#15313 <https://github.com/galaxyproject/galaxy/pull/15313>`_
* Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#15639 <https://github.com/galaxyproject/galaxy/pull/15639>`_
* Limit number of celery task executions per second per user by `@claudiofr <https://github.com/claudiofr>`_ in `#16232 <https://github.com/galaxyproject/galaxy/pull/16232>`_
* Add carbon emissions admin configuration options by `@Renni771 <https://github.com/Renni771>`_ in `#16307 <https://github.com/galaxyproject/galaxy/pull/16307>`_
* Add Invenio RDM repository integration by `@davelopez <https://github.com/davelopez>`_ in `#16381 <https://github.com/galaxyproject/galaxy/pull/16381>`_
* Add new datatype: STL by `@TanguyGen <https://github.com/TanguyGen>`_ in `#16478 <https://github.com/galaxyproject/galaxy/pull/16478>`_
* add new tabular file formats cns,cnr and cnn to datatypes_conf.xml.sample file as they are neaded for cnvkit galaxy tools by `@khaled196 <https://github.com/khaled196>`_ in `#16503 <https://github.com/galaxyproject/galaxy/pull/16503>`_
* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16536 <https://github.com/galaxyproject/galaxy/pull/16536>`_
* Implement datatype upload warnings by `@jmchilton <https://github.com/jmchilton>`_ in `#16564 <https://github.com/galaxyproject/galaxy/pull/16564>`_
* Support new genome browser chain file format by `@claudiofr <https://github.com/claudiofr>`_ in `#16576 <https://github.com/galaxyproject/galaxy/pull/16576>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16577 <https://github.com/galaxyproject/galaxy/pull/16577>`_
* Implement instance URLs in Galaxy markdown. by `@jmchilton <https://github.com/jmchilton>`_ in `#16675 <https://github.com/galaxyproject/galaxy/pull/16675>`_
* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola <https://github.com/lopiola>`_ in `#16690 <https://github.com/galaxyproject/galaxy/pull/16690>`_
* Update datatypes_conf.xml.sample with docx type by `@yvanlebras <https://github.com/yvanlebras>`_ in `#16713 <https://github.com/galaxyproject/galaxy/pull/16713>`_
* Replace ELIXIR AAI button with Life Science login by `@sebastian-schaaf <https://github.com/sebastian-schaaf>`_ in `#16762 <https://github.com/galaxyproject/galaxy/pull/16762>`_
* Add EGI Check-in as OIDC authentication option by `@enolfc <https://github.com/enolfc>`_ in `#16782 <https://github.com/galaxyproject/galaxy/pull/16782>`_
* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu <https://github.com/sveinugu>`_ in `#16795 <https://github.com/galaxyproject/galaxy/pull/16795>`_
* Galaxy help forum integration by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#16798 <https://github.com/galaxyproject/galaxy/pull/16798>`_
* Remove record access handling for Invenio RDM plugin by `@davelopez <https://github.com/davelopez>`_ in `#16900 <https://github.com/galaxyproject/galaxy/pull/16900>`_
* optimize object store cache operations by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#17025 <https://github.com/galaxyproject/galaxy/pull/17025>`_
* Support configuring job metrics inline, update documentation by `@natefoo <https://github.com/natefoo>`_ in `#17178 <https://github.com/galaxyproject/galaxy/pull/17178>`_
* Add binary datatypes for intermediate output of fastk tools by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#17265 <https://github.com/galaxyproject/galaxy/pull/17265>`_
* Add magres datatype by `@martenson <https://github.com/martenson>`_ in `#17499 <https://github.com/galaxyproject/galaxy/pull/17499>`_

=============
Other changes
=============

* Merge 23.1 into dev by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16534 <https://github.com/galaxyproject/galaxy/pull/16534>`_
* Remove xml remnant in sample yml job conf by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16609 <https://github.com/galaxyproject/galaxy/pull/16609>`_

-------------------
23.1.4 (2024-01-04)
-------------------

No recorded changes since last release

-------------------
23.1.3 (2023-12-01)
-------------------

No recorded changes since last release

-------------------
23.1.2 (2023-11-29)
-------------------


=========
Bug fixes
=========

* Prevent Singular external auth users from disconnecting identity by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16961 <https://github.com/galaxyproject/galaxy/pull/16961>`_
* Set correct tool_path for packaged galaxy by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17102 <https://github.com/galaxyproject/galaxy/pull/17102>`_

============
Enhancements
============

* Add support for larch datatypes by `@patrick-austin <https://github.com/patrick-austin>`_ in `#17080 <https://github.com/galaxyproject/galaxy/pull/17080>`_

-------------------
23.1.1 (2023-10-23)
-------------------


=========
Bug fixes
=========

* Fix some drs handling issues by `@nuwang <https://github.com/nuwang>`_ in `#15777 <https://github.com/galaxyproject/galaxy/pull/15777>`_
* Improve container resolver documentation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16280 <https://github.com/galaxyproject/galaxy/pull/16280>`_
* Limit tool document cache to tool configs with explicit cache path by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16537 <https://github.com/galaxyproject/galaxy/pull/16537>`_
* Backport tool mem fixes by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16601 <https://github.com/galaxyproject/galaxy/pull/16601>`_
* Fix allowlist deserialization in file sources by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16729 <https://github.com/galaxyproject/galaxy/pull/16729>`_

============
Enhancements
============

* External Login Flow: Redirect users if account already exists by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#15019 <https://github.com/galaxyproject/galaxy/pull/15019>`_
* Add slack error reporting plugin by `@hexylena <https://github.com/hexylena>`_ in `#15025 <https://github.com/galaxyproject/galaxy/pull/15025>`_
* Documents use of k8s_extra_job_envs in job_conf sample advanced by `@pcm32 <https://github.com/pcm32>`_ in `#15110 <https://github.com/galaxyproject/galaxy/pull/15110>`_
* Expose additional beaker caching backends  by `@claudiofr <https://github.com/claudiofr>`_ in `#15349 <https://github.com/galaxyproject/galaxy/pull/15349>`_
* Unify url handling with filesources by `@nuwang <https://github.com/nuwang>`_ in `#15497 <https://github.com/galaxyproject/galaxy/pull/15497>`_
* Handle "email_from" config option consistently, as per schema description by `@jdavcs <https://github.com/jdavcs>`_ in `#15557 <https://github.com/galaxyproject/galaxy/pull/15557>`_
* Drop workflow exports to myexperiment.org by `@dannon <https://github.com/dannon>`_ in `#15576 <https://github.com/galaxyproject/galaxy/pull/15576>`_
* Container resolvers: add docs, typing and tests by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15614 <https://github.com/galaxyproject/galaxy/pull/15614>`_
* Add suggested Training material to Tool Form by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#15628 <https://github.com/galaxyproject/galaxy/pull/15628>`_
* Deprecate tools/evolution by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15656 <https://github.com/galaxyproject/galaxy/pull/15656>`_
* Add Galaxy Notification System by `@davelopez <https://github.com/davelopez>`_ in `#15663 <https://github.com/galaxyproject/galaxy/pull/15663>`_
* More object store documentation. by `@jmchilton <https://github.com/jmchilton>`_ in `#15707 <https://github.com/galaxyproject/galaxy/pull/15707>`_
* Drop use_legacy_history from config  by `@dannon <https://github.com/dannon>`_ in `#15861 <https://github.com/galaxyproject/galaxy/pull/15861>`_
* FITS data format by `@volodymyrss <https://github.com/volodymyrss>`_ in `#15905 <https://github.com/galaxyproject/galaxy/pull/15905>`_
* Export tool citations configurable message by `@minh-biocommons <https://github.com/minh-biocommons>`_ in `#15998 <https://github.com/galaxyproject/galaxy/pull/15998>`_
* Rename object stores in config. by `@jmchilton <https://github.com/jmchilton>`_ in `#16029 <https://github.com/galaxyproject/galaxy/pull/16029>`_
* Add hdf4 datatype by `@TheoMathurin <https://github.com/TheoMathurin>`_ in `#16105 <https://github.com/galaxyproject/galaxy/pull/16105>`_
* Improved Cache Monitoring for Object Stores by `@jmchilton <https://github.com/jmchilton>`_ in `#16110 <https://github.com/galaxyproject/galaxy/pull/16110>`_
* Refactor caching object stores ahead of adding task-based store. by `@jmchilton <https://github.com/jmchilton>`_ in `#16144 <https://github.com/galaxyproject/galaxy/pull/16144>`_
* Add zipped mongodb and genenotebook datatypes by `@abretaud <https://github.com/abretaud>`_ in `#16173 <https://github.com/galaxyproject/galaxy/pull/16173>`_
* Add Visium datatype for squidpy and spatialomics tools by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#16255 <https://github.com/galaxyproject/galaxy/pull/16255>`_

=============
Other changes
=============

* Implement some initial object store selection end-to-end tests. by `@jmchilton <https://github.com/jmchilton>`_ in `#15785 <https://github.com/galaxyproject/galaxy/pull/15785>`_

-------------------
23.0.6 (2023-10-23)
-------------------

No recorded changes since last release

-------------------
23.0.5 (2023-07-29)
-------------------


=========
Bug fixes
=========

* Minor bug fix for default mail templates by `@neoformit <https://github.com/neoformit>`_ in `#16362 <https://github.com/galaxyproject/galaxy/pull/16362>`_

-------------------
23.0.4 (2023-06-30)
-------------------

No recorded changes since last release

-------------------
23.0.3 (2023-06-26)
-------------------

No recorded changes since last release

-------------------
23.0.2 (2023-06-13)
-------------------

No recorded changes since last release

-------------------
23.0.1 (2023-06-08)
-------------------


=========
Bug fixes
=========

* Change default watchdog inotify_buffer log level to info by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15967 <https://github.com/galaxyproject/galaxy/pull/15967>`_

============
Enhancements
============

* Add ``ca_certs`` option for sentry client by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15943 <https://github.com/galaxyproject/galaxy/pull/15943>`_

-------------------
22.1.1 (2022-08-22)
-------------------

* Initial release

            

Raw data

            {
    "_id": null,
    "home_page": "https://github.com/galaxyproject/galaxy",
    "name": "galaxy-config",
    "maintainer": null,
    "docs_url": null,
    "requires_python": ">=3.8",
    "maintainer_email": null,
    "keywords": "Galaxy",
    "author": "Galaxy Project and Community",
    "author_email": "galaxy-committers@lists.galaxyproject.org",
    "download_url": "https://files.pythonhosted.org/packages/52/3a/57c881f84bd9fcd74094c1bbe0a44bb583332f5c74ecc2314f332511ca31/galaxy-config-24.0.0.tar.gz",
    "platform": null,
    "description": "\n.. image:: https://badge.fury.io/py/galaxy-config.svg\n   :target: https://pypi.org/project/galaxy-config/\n\n\nOverview\n--------\n\nThe Galaxy_ config module.\n\n* Code: https://github.com/galaxyproject/galaxy\n\n.. _Galaxy: http://galaxyproject.org/\n\nHistory\n-------\n\n.. to_doc\n\n-------------------\n24.0.0 (2024-04-02)\n-------------------\n\n\n=========\nBug fixes\n=========\n\n* Follow-up on #17274 and #17262 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17302 <https://github.com/galaxyproject/galaxy/pull/17302>`_\n* Fix minor oidc_backends_config comment bug by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17385 <https://github.com/galaxyproject/galaxy/pull/17385>`_\n\n============\nEnhancements\n============\n\n* Add harmonize collections tool (or whatever other name) by `@lldelisle <https://github.com/lldelisle>`_ in `#16662 <https://github.com/galaxyproject/galaxy/pull/16662>`_\n* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_\n* Support for OIDC API Auth and OIDC integration tests by `@nuwang <https://github.com/nuwang>`_ in `#16977 <https://github.com/galaxyproject/galaxy/pull/16977>`_\n* Add support for (fast5.tar).xz binary compressed files by `@tuncK <https://github.com/tuncK>`_ in `#17106 <https://github.com/galaxyproject/galaxy/pull/17106>`_\n* Add a3m datatype by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#17217 <https://github.com/galaxyproject/galaxy/pull/17217>`_\n* Convert sample object store configuration to YAML and support configuring inline by `@natefoo <https://github.com/natefoo>`_ in `#17222 <https://github.com/galaxyproject/galaxy/pull/17222>`_\n* Allow job files to consume TUS uploads by `@jmchilton <https://github.com/jmchilton>`_ in `#17242 <https://github.com/galaxyproject/galaxy/pull/17242>`_\n* Add OIDC backend configuration schema and validation by `@uwwint <https://github.com/uwwint>`_ in `#17274 <https://github.com/galaxyproject/galaxy/pull/17274>`_\n* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_\n* Allow using tool data bundles as inputs to reference data select parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17435 <https://github.com/galaxyproject/galaxy/pull/17435>`_\n* Use short link for TPV shared database by `@nuwang <https://github.com/nuwang>`_ in `#17467 <https://github.com/galaxyproject/galaxy/pull/17467>`_\n* Feature SBOL datatypes by `@guillaume-gricourt <https://github.com/guillaume-gricourt>`_ in `#17482 <https://github.com/galaxyproject/galaxy/pull/17482>`_\n* Add documentation on how to use vault keys in file sources by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17498 <https://github.com/galaxyproject/galaxy/pull/17498>`_\n* add npy datatype by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#17517 <https://github.com/galaxyproject/galaxy/pull/17517>`_\n* Enhance Avivator display app to support regular Tiffs by `@davelopez <https://github.com/davelopez>`_ in `#17554 <https://github.com/galaxyproject/galaxy/pull/17554>`_\n* Allow admin to sharpen language about selected object stores. by `@jmchilton <https://github.com/jmchilton>`_ in `#17806 <https://github.com/galaxyproject/galaxy/pull/17806>`_\n\n-------------------\n23.2.1 (2024-02-21)\n-------------------\n\n\n=========\nBug fixes\n=========\n\n* pin fs.dropboxfs to >=1 by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16451 <https://github.com/galaxyproject/galaxy/pull/16451>`_\n* MINERVA display application: enable cors, add for tabular by `@hexylena <https://github.com/hexylena>`_ in `#16737 <https://github.com/galaxyproject/galaxy/pull/16737>`_\n* chore: fix typos by `@afuetterer <https://github.com/afuetterer>`_ in `#16851 <https://github.com/galaxyproject/galaxy/pull/16851>`_\n* Add back 1.1.0 version of Filtering1 tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16883 <https://github.com/galaxyproject/galaxy/pull/16883>`_\n* Set webdav file source to use temp files by default by `@davelopez <https://github.com/davelopez>`_ in `#17388 <https://github.com/galaxyproject/galaxy/pull/17388>`_\n\n============\nEnhancements\n============\n\n* Update cellxgene interactive tool to 1.1.1 by `@pcm32 <https://github.com/pcm32>`_ in `#15313 <https://github.com/galaxyproject/galaxy/pull/15313>`_\n* Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#15639 <https://github.com/galaxyproject/galaxy/pull/15639>`_\n* Limit number of celery task executions per second per user by `@claudiofr <https://github.com/claudiofr>`_ in `#16232 <https://github.com/galaxyproject/galaxy/pull/16232>`_\n* Add carbon emissions admin configuration options by `@Renni771 <https://github.com/Renni771>`_ in `#16307 <https://github.com/galaxyproject/galaxy/pull/16307>`_\n* Add Invenio RDM repository integration by `@davelopez <https://github.com/davelopez>`_ in `#16381 <https://github.com/galaxyproject/galaxy/pull/16381>`_\n* Add new datatype: STL by `@TanguyGen <https://github.com/TanguyGen>`_ in `#16478 <https://github.com/galaxyproject/galaxy/pull/16478>`_\n* add new tabular file formats cns,cnr and cnn to datatypes_conf.xml.sample file as they are neaded for cnvkit galaxy tools by `@khaled196 <https://github.com/khaled196>`_ in `#16503 <https://github.com/galaxyproject/galaxy/pull/16503>`_\n* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16536 <https://github.com/galaxyproject/galaxy/pull/16536>`_\n* Implement datatype upload warnings by `@jmchilton <https://github.com/jmchilton>`_ in `#16564 <https://github.com/galaxyproject/galaxy/pull/16564>`_\n* Support new genome browser chain file format by `@claudiofr <https://github.com/claudiofr>`_ in `#16576 <https://github.com/galaxyproject/galaxy/pull/16576>`_\n* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16577 <https://github.com/galaxyproject/galaxy/pull/16577>`_\n* Implement instance URLs in Galaxy markdown. by `@jmchilton <https://github.com/jmchilton>`_ in `#16675 <https://github.com/galaxyproject/galaxy/pull/16675>`_\n* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola <https://github.com/lopiola>`_ in `#16690 <https://github.com/galaxyproject/galaxy/pull/16690>`_\n* Update datatypes_conf.xml.sample with docx type by `@yvanlebras <https://github.com/yvanlebras>`_ in `#16713 <https://github.com/galaxyproject/galaxy/pull/16713>`_\n* Replace ELIXIR AAI button with Life Science login by `@sebastian-schaaf <https://github.com/sebastian-schaaf>`_ in `#16762 <https://github.com/galaxyproject/galaxy/pull/16762>`_\n* Add EGI Check-in as OIDC authentication option by `@enolfc <https://github.com/enolfc>`_ in `#16782 <https://github.com/galaxyproject/galaxy/pull/16782>`_\n* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu <https://github.com/sveinugu>`_ in `#16795 <https://github.com/galaxyproject/galaxy/pull/16795>`_\n* Galaxy help forum integration by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#16798 <https://github.com/galaxyproject/galaxy/pull/16798>`_\n* Remove record access handling for Invenio RDM plugin by `@davelopez <https://github.com/davelopez>`_ in `#16900 <https://github.com/galaxyproject/galaxy/pull/16900>`_\n* optimize object store cache operations by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#17025 <https://github.com/galaxyproject/galaxy/pull/17025>`_\n* Support configuring job metrics inline, update documentation by `@natefoo <https://github.com/natefoo>`_ in `#17178 <https://github.com/galaxyproject/galaxy/pull/17178>`_\n* Add binary datatypes for intermediate output of fastk tools by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#17265 <https://github.com/galaxyproject/galaxy/pull/17265>`_\n* Add magres datatype by `@martenson <https://github.com/martenson>`_ in `#17499 <https://github.com/galaxyproject/galaxy/pull/17499>`_\n\n=============\nOther changes\n=============\n\n* Merge 23.1 into dev by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16534 <https://github.com/galaxyproject/galaxy/pull/16534>`_\n* Remove xml remnant in sample yml job conf by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16609 <https://github.com/galaxyproject/galaxy/pull/16609>`_\n\n-------------------\n23.1.4 (2024-01-04)\n-------------------\n\nNo recorded changes since last release\n\n-------------------\n23.1.3 (2023-12-01)\n-------------------\n\nNo recorded changes since last release\n\n-------------------\n23.1.2 (2023-11-29)\n-------------------\n\n\n=========\nBug fixes\n=========\n\n* Prevent Singular external auth users from disconnecting identity by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16961 <https://github.com/galaxyproject/galaxy/pull/16961>`_\n* Set correct tool_path for packaged galaxy by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17102 <https://github.com/galaxyproject/galaxy/pull/17102>`_\n\n============\nEnhancements\n============\n\n* Add support for larch datatypes by `@patrick-austin <https://github.com/patrick-austin>`_ in `#17080 <https://github.com/galaxyproject/galaxy/pull/17080>`_\n\n-------------------\n23.1.1 (2023-10-23)\n-------------------\n\n\n=========\nBug fixes\n=========\n\n* Fix some drs handling issues by `@nuwang <https://github.com/nuwang>`_ in `#15777 <https://github.com/galaxyproject/galaxy/pull/15777>`_\n* Improve container resolver documentation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16280 <https://github.com/galaxyproject/galaxy/pull/16280>`_\n* Limit tool document cache to tool configs with explicit cache path by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16537 <https://github.com/galaxyproject/galaxy/pull/16537>`_\n* Backport tool mem fixes by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16601 <https://github.com/galaxyproject/galaxy/pull/16601>`_\n* Fix allowlist deserialization in file sources by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16729 <https://github.com/galaxyproject/galaxy/pull/16729>`_\n\n============\nEnhancements\n============\n\n* External Login Flow: Redirect users if account already exists by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#15019 <https://github.com/galaxyproject/galaxy/pull/15019>`_\n* Add slack error reporting plugin by `@hexylena <https://github.com/hexylena>`_ in `#15025 <https://github.com/galaxyproject/galaxy/pull/15025>`_\n* Documents use of k8s_extra_job_envs in job_conf sample advanced by `@pcm32 <https://github.com/pcm32>`_ in `#15110 <https://github.com/galaxyproject/galaxy/pull/15110>`_\n* Expose additional beaker caching backends  by `@claudiofr <https://github.com/claudiofr>`_ in `#15349 <https://github.com/galaxyproject/galaxy/pull/15349>`_\n* Unify url handling with filesources by `@nuwang <https://github.com/nuwang>`_ in `#15497 <https://github.com/galaxyproject/galaxy/pull/15497>`_\n* Handle \"email_from\" config option consistently, as per schema description by `@jdavcs <https://github.com/jdavcs>`_ in `#15557 <https://github.com/galaxyproject/galaxy/pull/15557>`_\n* Drop workflow exports to myexperiment.org by `@dannon <https://github.com/dannon>`_ in `#15576 <https://github.com/galaxyproject/galaxy/pull/15576>`_\n* Container resolvers: add docs, typing and tests by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15614 <https://github.com/galaxyproject/galaxy/pull/15614>`_\n* Add suggested Training material to Tool Form by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#15628 <https://github.com/galaxyproject/galaxy/pull/15628>`_\n* Deprecate tools/evolution by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15656 <https://github.com/galaxyproject/galaxy/pull/15656>`_\n* Add Galaxy Notification System by `@davelopez <https://github.com/davelopez>`_ in `#15663 <https://github.com/galaxyproject/galaxy/pull/15663>`_\n* More object store documentation. by `@jmchilton <https://github.com/jmchilton>`_ in `#15707 <https://github.com/galaxyproject/galaxy/pull/15707>`_\n* Drop use_legacy_history from config  by `@dannon <https://github.com/dannon>`_ in `#15861 <https://github.com/galaxyproject/galaxy/pull/15861>`_\n* FITS data format by `@volodymyrss <https://github.com/volodymyrss>`_ in `#15905 <https://github.com/galaxyproject/galaxy/pull/15905>`_\n* Export tool citations configurable message by `@minh-biocommons <https://github.com/minh-biocommons>`_ in `#15998 <https://github.com/galaxyproject/galaxy/pull/15998>`_\n* Rename object stores in config. by `@jmchilton <https://github.com/jmchilton>`_ in `#16029 <https://github.com/galaxyproject/galaxy/pull/16029>`_\n* Add hdf4 datatype by `@TheoMathurin <https://github.com/TheoMathurin>`_ in `#16105 <https://github.com/galaxyproject/galaxy/pull/16105>`_\n* Improved Cache Monitoring for Object Stores by `@jmchilton <https://github.com/jmchilton>`_ in `#16110 <https://github.com/galaxyproject/galaxy/pull/16110>`_\n* Refactor caching object stores ahead of adding task-based store. by `@jmchilton <https://github.com/jmchilton>`_ in `#16144 <https://github.com/galaxyproject/galaxy/pull/16144>`_\n* Add zipped mongodb and genenotebook datatypes by `@abretaud <https://github.com/abretaud>`_ in `#16173 <https://github.com/galaxyproject/galaxy/pull/16173>`_\n* Add Visium datatype for squidpy and spatialomics tools by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#16255 <https://github.com/galaxyproject/galaxy/pull/16255>`_\n\n=============\nOther changes\n=============\n\n* Implement some initial object store selection end-to-end tests. by `@jmchilton <https://github.com/jmchilton>`_ in `#15785 <https://github.com/galaxyproject/galaxy/pull/15785>`_\n\n-------------------\n23.0.6 (2023-10-23)\n-------------------\n\nNo recorded changes since last release\n\n-------------------\n23.0.5 (2023-07-29)\n-------------------\n\n\n=========\nBug fixes\n=========\n\n* Minor bug fix for default mail templates by `@neoformit <https://github.com/neoformit>`_ in `#16362 <https://github.com/galaxyproject/galaxy/pull/16362>`_\n\n-------------------\n23.0.4 (2023-06-30)\n-------------------\n\nNo recorded changes since last release\n\n-------------------\n23.0.3 (2023-06-26)\n-------------------\n\nNo recorded changes since last release\n\n-------------------\n23.0.2 (2023-06-13)\n-------------------\n\nNo recorded changes since last release\n\n-------------------\n23.0.1 (2023-06-08)\n-------------------\n\n\n=========\nBug fixes\n=========\n\n* Change default watchdog inotify_buffer log level to info by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15967 <https://github.com/galaxyproject/galaxy/pull/15967>`_\n\n============\nEnhancements\n============\n\n* Add ``ca_certs`` option for sentry client by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15943 <https://github.com/galaxyproject/galaxy/pull/15943>`_\n\n-------------------\n22.1.1 (2022-08-22)\n-------------------\n\n* Initial release\n",
    "bugtrack_url": null,
    "license": "AFL",
    "summary": "Galaxy configuration",
    "version": "24.0.0",
    "project_urls": {
        "Homepage": "https://github.com/galaxyproject/galaxy"
    },
    "split_keywords": [
        "galaxy"
    ],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "08b06cbaf6bad41552a9455efe29b7a1ca9085f1789112da92272c54ae61c450",
                "md5": "5d6c2d9074137b35167d7d3b2c519008",
                "sha256": "6d23d39cf6d61c7b46cc4b3bd416e59afa0dad36fd1741e46f2400a524f03e2f"
            },
            "downloads": -1,
            "filename": "galaxy_config-24.0.0-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "5d6c2d9074137b35167d7d3b2c519008",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": ">=3.8",
            "size": 224392,
            "upload_time": "2024-04-03T02:47:18",
            "upload_time_iso_8601": "2024-04-03T02:47:18.566239Z",
            "url": "https://files.pythonhosted.org/packages/08/b0/6cbaf6bad41552a9455efe29b7a1ca9085f1789112da92272c54ae61c450/galaxy_config-24.0.0-py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "523a57c881f84bd9fcd74094c1bbe0a44bb583332f5c74ecc2314f332511ca31",
                "md5": "ce2468ce3df8da4c31c31b17bcadfc52",
                "sha256": "81167a06f559cb5eb12a6848f93ac4b0ba7297afd8d3a9907eb769319df2af98"
            },
            "downloads": -1,
            "filename": "galaxy-config-24.0.0.tar.gz",
            "has_sig": false,
            "md5_digest": "ce2468ce3df8da4c31c31b17bcadfc52",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": ">=3.8",
            "size": 213095,
            "upload_time": "2024-04-03T02:47:20",
            "upload_time_iso_8601": "2024-04-03T02:47:20.238209Z",
            "url": "https://files.pythonhosted.org/packages/52/3a/57c881f84bd9fcd74094c1bbe0a44bb583332f5c74ecc2314f332511ca31/galaxy-config-24.0.0.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-04-03 02:47:20",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "galaxyproject",
    "github_project": "galaxy",
    "travis_ci": false,
    "coveralls": true,
    "github_actions": true,
    "circle": true,
    "requirements": [],
    "tox": true,
    "lcname": "galaxy-config"
}
        
Elapsed time: 0.26191s