gemmapy

Name	gemmapy JSON
Version	1.0.7 JSON
	download
home_page	None
Summary	a Python Wrapper for the Gemma API
upload_time	2024-08-08 04:55:04
maintainer	None
docs_url	None
author	None
requires_python	>3.10
license	None
keywords	gemma bioinformatics
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            gemmapy: a Python Wrapper for the Gemma API
===========================================

This is a Python wrapper for `Gemma <https://gemma.msl.ubc.ca/>`_'s
RESTful `API <https://gemma.msl.ubc.ca/resources/restapidocs/>`_. Gemma is a web
site, database and a set of tools for the meta-analysis, re-use and
sharing of genomics data, currently primarily targeted at the analysis
of gene expression profiles. Gemma contains data from thousands of
public studies, referencing thousands of published papers.


Installation instructions
-------------------------
.. This is a content of docs/install.rst. Update it whenever install.rst changes.
   
The package requires Python3.10+. 

#. Install it from a local copy

   .. code-block:: bash

      git clone git@github.com:PavlidisLab/gemmapy.git
      cd gemmapy
      pip install .

#. Install it from PyPI 

   .. code-block:: bash

      pip install gemmapy


Usage
-----

To get started with *gemmapy*, read the 
`Tutorial <https://pavlidislab.github.io/gemmapy/tutorial.html>`_.

The full documentation can be found at 
https://pavlidislab.github.io/gemmapy/.


Citation
--------

To cite Gemma, please use: `Lim, N. et al., Curation of over 10 000
transcriptomic studies to enable data reuse, Database, 2021
<https://doi.org/10.1093/database/baab006>`_.

            

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