genome-grist

Name	genome-grist JSON
Version	0.9.3 JSON
	download
home_page	https://github.com/dib-lab/genome-grist
Summary	tools to support genome and metagenome analysis
upload_time	2022-12-07 14:57:20
maintainer
docs_url	None
author	C. Titus Brown, Luiz Irber, Tessa Pierce, Taylor Reiter
requires_python
license	BSD 3-clause
keywords
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # genome-grist README

<!-- CTB: this is /README.md in dib-lab/genome-grist -->

<a href="https://pypi.org/project/genome-grist/"><img alt="PyPI" src="https://badge.fury.io/py/genome-grist.svg"></a>
<img alt="License: 3-Clause BSD" src="https://img.shields.io/badge/License-BSD%203--Clause-blue.svg">

genome-grist analyzes the strain composition of microbial metagenomes
using
[minimum metagenome covers](https://dib-lab.github.io/2020-paper-sourmash-gather/)
and produces a variety of compositional and taxonomic summaries.

Check out the
[quick start!](https://dib-lab.github.io/genome-grist/quickstart/) And
please also see
[the rest of the docs](https://dib-lab.github.io/genome-grist/) for
more information!

## Example: the strain composition of a gut microbiome (iHMP)

This figure was autogenerated by genome-grist.

![an example image made with genome-grist](doc/gather-vs-mapping.png)

---

[CTB](https://twitter.com/ctitusbrown/) 01/22



            

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