genomenotebook

Name	genomenotebook JSON
Version	1.0.0 JSON
	download
home_page	https://github.com/dbikard/genomenotebook
Summary	A genome browser in your Jupyter notebook
upload_time	2024-12-13 10:00:29
maintainer	None
docs_url	None
author	David Bikard
requires_python	>=3.7
license	Apache Software License 2.0
keywords	nbdev jupyter notebook python
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            

<!-- WARNING: THIS FILE WAS AUTOGENERATED! DO NOT EDIT! -->

# GenomeNotebook (1.0.0)

> A genome browser in your Jupyter notebook

## Install

``` bash
pip install genomenotebook
```

#### Upgrade

New versions of genomenotebook are released on a regular basis. Make
sure to upgrade your installation to enjoy all the features.

``` bash
pip install genomenotebook --upgrade
```

## How to use

Create a simple genome browser with a search bar. The sequence appears
when zooming in.

Tracks can be added to visualize your favorite genomics data. See
[Examples](https://dbikard.github.io/genomenotebook/examples.html) for
more !!!!

``` python
import genomenotebook as gn
```

``` python
g=gn.GenomeBrowser(gff_path=gff_path, fasta_path=fasta_path, init_pos=10000, bounds=(0,100000))
g.show()
```

## Documentation

<https://dbikard.github.io/genomenotebook/>

            

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