gentab


Namegentab JSON
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SummaryA synthetic tabular data generation library.
upload_time2024-04-25 12:00:58
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requires_python>=3.9
licenseNone
keywords data deep learning generation machine learning synthetic tabular
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# GenTab

Synthetic Tabular Data Generation Library

## Overview

This Python library specializes in the generation of synthetic tabular data. It has a diverse range of statistical, Machine Learning (ML) and Deep Learning (DL) methods to accurately capture patterns in real datasets and replicate them in a synthetic context. It has multiple applications including pre-processing of tabular datasets, data balancing, resampling...

## Features

:nut_and_bolt: Pre-process your data.

:clock130: State-of-the-art models.

:recycle: Easy to use and customize. 

## Install

The `gentab` library is available using pip. We recommend using a virtual environment to avoid conflicts with other software on your machine.

``` bash
pip install gentab
```

## Available Generators

Below is the list of the generators currently available in the library.

### Linear

|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |
|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|
| Random Over-Sampling      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://link.springer.com/article/10.1007/s10618-012-0295-5)
| SMOTE                   | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() |            [link](https://arxiv.org/abs/1106.1813)                                  |                                                                            |
| ADASYN      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://ieeexplore.ieee.org/document/4633969)

### PDF
|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |
|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|
| Gaussian Copula      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://ieeexplore.ieee.org/abstract/document/7796926)


### AE

|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |
|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|
| TVAE      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/1907.00503)

### GAN

|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |
|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|
| CTGAN      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/1907.00503)
| CTAB-GAN      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://proceedings.mlr.press/v157/zhao21a.html)
| CTAB-GAN+      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() |  [link](https://arxiv.org/abs/2204.00401)

### Diffusion

|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |
|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|
| ForestDiffusion      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/2309.09968)

### LLM

|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |
|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|
| GReaT      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/2210.06280)
| Tabula      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/2310.12746)

### Hybrid

|               Model                  |                                                                                    Example                                                                                    |                     Papers                    |
|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|
| Copula GAN      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://ieeexplore.ieee.org/abstract/document/7796926) [link](https://arxiv.org/abs/1907.00503)
| AutoDiffusion      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/2310.15479)

## Examples

### Generation

``` python
from gentab.generators import AutoDiffusion
from gentab.evaluators import MLP
from gentab.data import Config, Dataset
from gentab.utils import console

config = Config("configs/playnet.json")

dataset = Dataset(config)
dataset.reduce_size(
    {
        "left_attack": 0.97,
        "right_attack": 0.97,
        "right_transition": 0.9,
        "left_transition": 0.9,
        "time_out": 0.8,
        "left_penal": 0.5,
        "right_penal": 0.5,
    }
)
dataset.merge_classes(
    {
        "attack": ["left_attack", "right_attack"],
        "transition": ["left_transition", "right_transition"],
        "penalty": ["left_penal", "right_penal"],
    }
)
dataset.reduce_mem()

console.print(dataset.class_counts(), dataset.row_count())
generator = AutoDiffusion(dataset)
generator.generate()
console.print(dataset.generated_class_counts(), dataset.generated_row_count())

evaluator = MLP(generator)
evaluator.evaluate()

dataset.save_to_disk(generator)
```

### Tuning

``` python
from gentab.generators import AutoDiffusion
from gentab.evaluators import LightGBM
from gentab.tuners import AutoDiffusionTuner
from gentab.data import Config, Dataset

config = Config("configs/adult.json")

dataset = Dataset(config)
dataset.merge_classes({
    "<=50K": ["<=50K."], ">50K": [">50K."]
})
dataset.reduce_mem()

generator = AutoDiffusion(dataset)

evaluator = LightGBM(generator)

trials = 10
time = 60 * 60 * 8
tuner = AutoDiffusionTuner(evaluator, trials, timeout=time)
tuner.tune()
tuner.save_to_disk()
```

### Loading Stored Synthetic Datasets

``` python
from gentab.generators import AutoDiffusion
from gentab.evaluators import LightGBM
from gentab.tuners import AutoDiffusionTuner
from gentab.data import Config, Dataset

config = Config("configs/adult.json")

dataset = Dataset(config)
dataset.merge_classes({
    "<=50K": ["<=50K."], ">50K": [">50K."]
})
dataset.reduce_mem()

# Load previously saved dataset...
generator = AutoDiffusion(dataset)
generator.load_from_disk()

# Do work with previously generated but not tuned dataset...
evaluator = LightGBM(generator)
evaluator.evaluate()
evaluator.evaluate_baseline()

# Load previously tuned and saved dataset...
tuner = AutoDiffusionTuner(evaluator, 0)
tuner.load_from_disk()

# Do work with previously tuned dataset...
evaluator.evaluate()
evaluator.evaluate_baseline()
```

            

Raw data

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    "description": "<p align=\"center\">\n    <a>\n\t    <img src='https://img.shields.io/badge/python-3.10%2B-blueviolet' alt='Python' />\n\t</a>\n    <a>\n\t    <img src='https://img.shields.io/badge/code%20style-black-black' />\n\t</a>\n\t<a href=\"\">\n  \t\t<img src=\"https://colab.research.google.com/assets/colab-badge.svg\"/>\n\t</a>\n    <a href='https://opensource.org/license/gpl-3-0'>\n\t    <img src='https://img.shields.io/badge/license-GPLv3-blue' />\n\t</a>\n</p>\n\n# GenTab\n\nSynthetic Tabular Data Generation Library\n\n## Overview\n\nThis Python library specializes in the generation of synthetic tabular data. It has a diverse range of statistical, Machine Learning (ML) and Deep Learning (DL) methods to accurately capture patterns in real datasets and replicate them in a synthetic context. It has multiple applications including pre-processing of tabular datasets, data balancing, resampling...\n\n## Features\n\n:nut_and_bolt: Pre-process your data.\n\n:clock130: State-of-the-art models.\n\n:recycle: Easy to use and customize. \n\n## Install\n\nThe `gentab` library is available using pip. We recommend using a virtual environment to avoid conflicts with other software on your machine.\n\n``` bash\npip install gentab\n```\n\n## Available Generators\n\nBelow is the list of the generators currently available in the library.\n\n### Linear\n\n|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |\n|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|\n| Random Over-Sampling      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://link.springer.com/article/10.1007/s10618-012-0295-5)\n| SMOTE                   | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() |            [link](https://arxiv.org/abs/1106.1813)                                  |                                                                            |\n| ADASYN      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://ieeexplore.ieee.org/document/4633969)\n\n### PDF\n|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |\n|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|\n| Gaussian Copula      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://ieeexplore.ieee.org/abstract/document/7796926)\n\n\n### AE\n\n|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |\n|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|\n| TVAE      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/1907.00503)\n\n### GAN\n\n|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |\n|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|\n| CTGAN      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/1907.00503)\n| CTAB-GAN      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://proceedings.mlr.press/v157/zhao21a.html)\n| CTAB-GAN+      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() |  [link](https://arxiv.org/abs/2204.00401)\n\n### Diffusion\n\n|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |\n|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|\n| ForestDiffusion      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/2309.09968)\n\n### LLM\n\n|               Model                  |                                                                                    Example                                                                                    |                     Paper                    |\n|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|\n| GReaT      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/2210.06280)\n| Tabula      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/2310.12746)\n\n### Hybrid\n\n|               Model                  |                                                                                    Example                                                                                    |                     Papers                    |\n|:--------------------------------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------------------------------:|\n| Copula GAN      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://ieeexplore.ieee.org/abstract/document/7796926) [link](https://arxiv.org/abs/1907.00503)\n| AutoDiffusion      | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)]() | [link](https://arxiv.org/abs/2310.15479)\n\n## Examples\n\n### Generation\n\n``` python\nfrom gentab.generators import AutoDiffusion\nfrom gentab.evaluators import MLP\nfrom gentab.data import Config, Dataset\nfrom gentab.utils import console\n\nconfig = Config(\"configs/playnet.json\")\n\ndataset = Dataset(config)\ndataset.reduce_size(\n    {\n        \"left_attack\": 0.97,\n        \"right_attack\": 0.97,\n 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