ghfc-utils


Nameghfc-utils JSON
Version 0.1.13 PyPI version JSON
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SummaryVarious genomics tools and scripts used in the GHFC lab
upload_time2025-02-21 23:08:19
maintainerNone
docs_urlNone
authorNone
requires_python<3.13,>=3.10
licenseMIT License Copyright (c) 2023 bourgeron-lab Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
keywords wgs de novo mutations genomics slivar variant filtering
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            # ghfc-utils

set of small tools designed to help automatize simple task locally or on Pasteur's cluster.

- **slivar-reannotate** for the postprocessing of slivar files including filtering and geneset reannotation.
- **slivar-dnm** for the computation of a prediction score about the veracity of *de novo* mutations

## Installation

```bash
pip install ghfc-utils
```

PS. on maestro, do not forget to load Python first (not needed anymore once installed):

```bash
module load Python/3.9.16
```

### Installation using **uv**

TODO

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    "description": "# ghfc-utils\n\nset of small tools designed to help automatize simple task locally or on Pasteur's cluster.\n\n- **slivar-reannotate** for the postprocessing of slivar files including filtering and geneset reannotation.\n- **slivar-dnm** for the computation of a prediction score about the veracity of *de novo* mutations\n\n## Installation\n\n```bash\npip install ghfc-utils\n```\n\nPS. on maestro, do not forget to load Python first (not needed anymore once installed):\n\n```bash\nmodule load Python/3.9.16\n```\n\n### Installation using **uv**\n\nTODO\n",
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