| Name | gotranx JSON |
| Version |
0.3.5
JSON |
| download |
| home_page | None |
| Summary | A declarative language describing ordinary differential equations |
| upload_time | 2024-04-04 09:43:02 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.8 |
| license | MIT |
| keywords |
parser
lark
gotran
ode
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
[](https://github.com/finsberg/gotranx/actions/workflows/pre-commit.yml)
[](https://github.com/finsberg/gotranx/actions/workflows/main.yml)
[](https://finsberg.github.io/gotranx)
[](https://opensource.org/licenses/MIT)
[](https://github.com/psf/black)
# gotranx
`gotranx` is the next generation General ODE translator and is an attempt to a full rewrite of [gotran](https://github.com/ComputationalPhysiology/gotran).
The general idea is that you write your ODE in a high level markup language and use `gotranx` to generate code for solving the ODE in different programming languages.
At the moment we only support Python and C, but we plan to support a wide range of programming languages in the future.
`gotranx` uses [`sympy`](https://www.sympy.org/en/index.html) to generate the numerical schemes.
- Source code: https://github.com/finsberg/gotranx
- Documentation: https://finsberg.github.io/gotranx/
## Install
Install with pip
```
python3 -m pip install gotranx
```
or for the development version
```
python3 -m pip install git+https://github.com/finsberg/gotranx
```
## Quick start
Check out the demos in the [documentation](https://finsberg.github.io/gotranx/demos/cli) and the [examples in the repository](https://github.com/finsberg/gotranx/tree/main/examples).
## Road map
The plan is to have all the features from the old [gotran](https://github.com/ComputationalPhysiology/gotran) implemented in `gotranx` (and some more). This includes
- [ ] More numerical schemes
- [x] Forward Euler
- [ ] Rush Larsen
- [x] Generalized Rush Larsen
- [ ] Hybrid Generalized Rush Larsen
- [ ] Simplified Implicit Euler
- [ ] Newton's method for implicit schemes
- [ ] Code generation for more languages
- [x] Python
- [x] C
- [ ] C++
- [ ] Julia
- [ ] CUDA
- [ ] OpenCL
- [ ] Rust
- [ ] Latex
- [ ] Markdown
- [x] Converters between commonly used ODE markup languages
- [x] [`Myokit`](https://github.com/myokit/myokit) (still some limited support for unit conversion, see [issue #26](https://github.com/finsberg/gotranx/issues/26))
- [x] CellML (supported via MyoKit)
If you have additional feature requests, please [open an issue](https://github.com/finsberg/gotranx/issues)
## Contributing
Contributions are very welcomed, but please read the [contributing guide](https://finsberg.github.io/gotranx/CONTRIBUTING/) first
Raw data
{
"_id": null,
"home_page": null,
"name": "gotranx",
"maintainer": null,
"docs_url": null,
"requires_python": ">=3.8",
"maintainer_email": null,
"keywords": "parser, lark, gotran, ode",
"author": null,
"author_email": "Henrik Finsberg <henriknf@simula.no>",
"download_url": "https://files.pythonhosted.org/packages/5f/56/66f6283a7fa952e442a20ba535bbc1c0789a7f1ea68474c34bed8962ec3f/gotranx-0.3.5.tar.gz",
"platform": null,
"description": "[](https://github.com/finsberg/gotranx/actions/workflows/pre-commit.yml)\n[](https://github.com/finsberg/gotranx/actions/workflows/main.yml)\n[](https://finsberg.github.io/gotranx)\n[](https://opensource.org/licenses/MIT)\n[](https://github.com/psf/black)\n# gotranx\n\n`gotranx` is the next generation General ODE translator and is an attempt to a full rewrite of [gotran](https://github.com/ComputationalPhysiology/gotran).\n\nThe general idea is that you write your ODE in a high level markup language and use `gotranx` to generate code for solving the ODE in different programming languages.\n\nAt the moment we only support Python and C, but we plan to support a wide range of programming languages in the future.\n\n`gotranx` uses [`sympy`](https://www.sympy.org/en/index.html) to generate the numerical schemes.\n\n- Source code: https://github.com/finsberg/gotranx\n- Documentation: https://finsberg.github.io/gotranx/\n\n\n## Install\nInstall with pip\n```\npython3 -m pip install gotranx\n```\nor for the development version\n```\npython3 -m pip install git+https://github.com/finsberg/gotranx\n```\n\n## Quick start\nCheck out the demos in the [documentation](https://finsberg.github.io/gotranx/demos/cli) and the [examples in the repository](https://github.com/finsberg/gotranx/tree/main/examples).\n\n\n## Road map\nThe plan is to have all the features from the old [gotran](https://github.com/ComputationalPhysiology/gotran) implemented in `gotranx` (and some more). This includes\n\n- [ ] More numerical schemes\n - [x] Forward Euler\n - [ ] Rush Larsen\n - [x] Generalized Rush Larsen\n - [ ] Hybrid Generalized Rush Larsen\n - [ ] Simplified Implicit Euler\n - [ ] Newton's method for implicit schemes\n- [ ] Code generation for more languages\n - [x] Python\n - [x] C\n - [ ] C++\n - [ ] Julia\n - [ ] CUDA\n - [ ] OpenCL\n - [ ] Rust\n - [ ] Latex\n - [ ] Markdown\n- [x] Converters between commonly used ODE markup languages\n - [x] [`Myokit`](https://github.com/myokit/myokit) (still some limited support for unit conversion, see [issue #26](https://github.com/finsberg/gotranx/issues/26))\n - [x] CellML (supported via MyoKit)\n\n\nIf you have additional feature requests, please [open an issue](https://github.com/finsberg/gotranx/issues)\n\n## Contributing\nContributions are very welcomed, but please read the [contributing guide](https://finsberg.github.io/gotranx/CONTRIBUTING/) first\n",
"bugtrack_url": null,
"license": "MIT",
"summary": "A declarative language describing ordinary differential equations",
"version": "0.3.5",
"project_urls": {
"Homepage": "https://github.com/finsberg/gotranx"
},
"split_keywords": [
"parser",
" lark",
" gotran",
" ode"
],
"urls": [
{
"comment_text": "",
"digests": {
"blake2b_256": "b4c892601083d9dbcef35946405ddc1b8eb976eacda886ebcc9b378848a0613a",
"md5": "8de905a5ccc7b095cb0cc09d4591d6e5",
"sha256": "24c1bed9290e047643f119fc8d6a107861452e59e4034390d4c4d038e4913118"
},
"downloads": -1,
"filename": "gotranx-0.3.5-py3-none-any.whl",
"has_sig": false,
"md5_digest": "8de905a5ccc7b095cb0cc09d4591d6e5",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": ">=3.8",
"size": 35851,
"upload_time": "2024-04-04T09:42:59",
"upload_time_iso_8601": "2024-04-04T09:42:59.786025Z",
"url": "https://files.pythonhosted.org/packages/b4/c8/92601083d9dbcef35946405ddc1b8eb976eacda886ebcc9b378848a0613a/gotranx-0.3.5-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": "",
"digests": {
"blake2b_256": "5f5666f6283a7fa952e442a20ba535bbc1c0789a7f1ea68474c34bed8962ec3f",
"md5": "993324a91d5ee8baa142d2c1aa6aea15",
"sha256": "9167bc40ed24b2eac2a9facba282644e840b576fb61d1e6badc4ad0fc2d8ff0f"
},
"downloads": -1,
"filename": "gotranx-0.3.5.tar.gz",
"has_sig": false,
"md5_digest": "993324a91d5ee8baa142d2c1aa6aea15",
"packagetype": "sdist",
"python_version": "source",
"requires_python": ">=3.8",
"size": 43890,
"upload_time": "2024-04-04T09:43:02",
"upload_time_iso_8601": "2024-04-04T09:43:02.556462Z",
"url": "https://files.pythonhosted.org/packages/5f/56/66f6283a7fa952e442a20ba535bbc1c0789a7f1ea68474c34bed8962ec3f/gotranx-0.3.5.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2024-04-04 09:43:02",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "finsberg",
"github_project": "gotranx",
"travis_ci": false,
"coveralls": false,
"github_actions": true,
"lcname": "gotranx"
}
