| Name | hail JSON |
| Version |
0.2.130
JSON |
| download |
| home_page | https://hail.is |
| Summary | Scalable library for exploring and analyzing genomic data. |
| upload_time | 2024-04-10 20:37:13 |
| maintainer | None |
| docs_url | None |
| author | Hail Team |
| requires_python | >=3.9 |
| license | None |
| keywords |
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# Hail
[](https://hail.zulipchat.com?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge) [](https://zenodo.org/badge/latestdoi/45069467) [](https://badge.fury.io/py/hail)
[Hail](https://hail.is) is an open-source, general-purpose, Python-based data analysis tool with additional data types and methods for working with genomic data.
Hail is built to scale and has first-class support for multi-dimensional structured data, like the genomic data in a genome-wide association study (GWAS).
Hail is exposed as a Python library, using primitives for distributed queries and linear algebra implemented in Scala, [Spark](https://spark.apache.org/docs/latest/index.html), and increasingly C++.
See the [documentation](https://hail.is/docs/0.2/) for more info on using Hail.
### Community
Hail has been widely adopted in academia and industry, including as the analysis platform for the [genome aggregation database](https://gnomad.broadinstitute.org) and [UK Biobank rapid GWAS](https://www.nealelab.is/uk-biobank). Learn more about [Hail-powered science](https://hail.is/references.html).
### Contribute
If you'd like to discuss or contribute to the development of methods or infrastructure, please:
- see the [For Software Developers](https://hail.is/docs/0.2/getting_started_developing.html) section of the installation guide for info on compiling Hail
- chat with us about development in our [Zulip chatroom](https://hail.zulipchat.com)
- visit the [Development Forum](https://dev.hail.is) for longer-form discussions
<!--- - read [this post]() (coming soon!) for tips on submitting a successful Pull Request to our repository --->
Hail uses a continuous deployment approach to software development, which means we frequently add new features. We update users about changes to Hail via the [Discussion Forum](https://discuss.hail.is). We recommend creating an account on the Discussion Forum so that you can subscribe to these updates as well.
### Maintainer
Hail is maintained by a team in the [Neale lab](https://nealelab.is/) at the [Stanley Center for Psychiatric Research](https://www.broadinstitute.org/stanley) of the [Broad Institute of MIT and Harvard](https://www.broadinstitute.org) and the [Analytic and Translational Genetics Unit](https://www.atgu.mgh.harvard.edu/) of [Massachusetts General Hospital](https://www.massgeneral.org/).
Contact the Hail team at <code><a href="mailto:hail@broadinstitute.org">hail@broadinstitute.org</a></code>.
### Citing Hail
If you use Hail for published work, please cite the software. You can get a
citation for the version of Hail you installed by executing:
```python
import hail as hl
print(hl.citation())
```
Which will look like:
```
Hail Team. Hail 0.2.13-81ab564db2b4. https://github.com/hail-is/hail/releases/tag/0.2.13.
```
##### Acknowledgements
The Hail team has several sources of funding at the Broad Institute:
- The Stanley Center for Psychiatric Research, which together with Neale Lab has provided an incredibly supportive and stimulating home.
- Principal Investigators Benjamin Neale and Daniel MacArthur, whose scientific leadership has been essential for solving the right problems.
- Jeremy Wertheimer, whose strategic advice and generous philanthropy have been essential for growing the impact of Hail.
We are grateful for generous support from:
- The National Institute of Diabetes and Digestive and Kidney Diseases
- The National Institute of Mental Health
- The National Human Genome Research Institute
- The Chan Zuckerberg Initiative
We would like to thank <a href="https://zulipchat.com/">Zulip</a> for supporting
open-source by providing free hosting, and YourKit, LLC for generously providing
free licenses for <a href="https://www.yourkit.com/java/profiler/">YourKit Java
Profiler</a> for open-source development.
<img src="https://www.yourkit.com/images/yklogo.png" align="right" />
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"description": "# Hail\n\n[](https://hail.zulipchat.com?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge) [](https://zenodo.org/badge/latestdoi/45069467) [](https://badge.fury.io/py/hail)\n\n[Hail](https://hail.is) is an open-source, general-purpose, Python-based data analysis tool with additional data types and methods for working with genomic data.\n\nHail is built to scale and has first-class support for multi-dimensional structured data, like the genomic data in a genome-wide association study (GWAS).\n\nHail is exposed as a Python library, using primitives for distributed queries and linear algebra implemented in Scala, [Spark](https://spark.apache.org/docs/latest/index.html), and increasingly C++.\n\nSee the [documentation](https://hail.is/docs/0.2/) for more info on using Hail.\n\n### Community\n\nHail has been widely adopted in academia and industry, including as the analysis platform for the [genome aggregation database](https://gnomad.broadinstitute.org) and [UK Biobank rapid GWAS](https://www.nealelab.is/uk-biobank). Learn more about [Hail-powered science](https://hail.is/references.html).\n\n### Contribute\n\nIf you'd like to discuss or contribute to the development of methods or infrastructure, please:\n\n- see the [For Software Developers](https://hail.is/docs/0.2/getting_started_developing.html) section of the installation guide for info on compiling Hail\n- chat with us about development in our [Zulip chatroom](https://hail.zulipchat.com)\n- visit the [Development Forum](https://dev.hail.is) for longer-form discussions\n<!--- - read [this post]() (coming soon!) for tips on submitting a successful Pull Request to our repository --->\n\nHail uses a continuous deployment approach to software development, which means we frequently add new features. We update users about changes to Hail via the [Discussion Forum](https://discuss.hail.is). We recommend creating an account on the Discussion Forum so that you can subscribe to these updates as well.\n\n### Maintainer\n\nHail is maintained by a team in the [Neale lab](https://nealelab.is/) at the [Stanley Center for Psychiatric Research](https://www.broadinstitute.org/stanley) of the [Broad Institute of MIT and Harvard](https://www.broadinstitute.org) and the [Analytic and Translational Genetics Unit](https://www.atgu.mgh.harvard.edu/) of [Massachusetts General Hospital](https://www.massgeneral.org/).\n\nContact the Hail team at <code><a href=\"mailto:hail@broadinstitute.org\">hail@broadinstitute.org</a></code>.\n\n### Citing Hail\n\nIf you use Hail for published work, please cite the software. You can get a\ncitation for the version of Hail you installed by executing:\n\n```python\nimport hail as hl\nprint(hl.citation())\n```\n\nWhich will look like:\n\n```\nHail Team. Hail 0.2.13-81ab564db2b4. https://github.com/hail-is/hail/releases/tag/0.2.13.\n```\n\n##### Acknowledgements\n\nThe Hail team has several sources of funding at the Broad Institute:\n- The Stanley Center for Psychiatric Research, which together with Neale Lab has provided an incredibly supportive and stimulating home.\n- Principal Investigators Benjamin Neale and Daniel MacArthur, whose scientific leadership has been essential for solving the right problems.\n- Jeremy Wertheimer, whose strategic advice and generous philanthropy have been essential for growing the impact of Hail.\n\nWe are grateful for generous support from:\n- The National Institute of Diabetes and Digestive and Kidney Diseases\n- The National Institute of Mental Health\n- The National Human Genome Research Institute\n- The Chan Zuckerberg Initiative\n\nWe would like to thank <a href=\"https://zulipchat.com/\">Zulip</a> for supporting\nopen-source by providing free hosting, and YourKit, LLC for generously providing\nfree licenses for <a href=\"https://www.yourkit.com/java/profiler/\">YourKit Java\nProfiler</a> for open-source development.\n\n<img src=\"https://www.yourkit.com/images/yklogo.png\" align=\"right\" />\n",
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