hg19genome

Name	hg19genome JSON
Version	1.0.1 JSON
	download
home_page	https://github.com/kylessmith/hg19genome
Summary	Python package hg19 genome annotation
upload_time	2023-05-17 13:41:58
maintainer	Kyle S. Smith
docs_url	None
author	Kyle S. Smith
requires_python	>=3.10,<4.0
license	GPL-2.0-or-later
keywords	cython annotation hg19genome c
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # hg19genome

[![Build Status](https://travis-ci.org/kylessmith/hg19genome.svg?branch=master)](https://travis-ci.org/kylessmith/hg19genome) [![PyPI version](https://badge.fury.io/py/hg19genome.svg)](https://badge.fury.io/py/hg19genome)
[![Coffee](https://img.shields.io/badge/-buy_me_a%C2%A0coffee-gray?logo=buy-me-a-coffee&color=ff69b4)](https://www.buymeacoffee.com/kylessmith)

A package to work with hg19 genomic intervals.


## Install

If you dont already have numpy and scipy installed, it is best to download
`Anaconda`, a python distribution that has them included.  
```
    https://continuum.io/downloads
```

Dependencies can be installed by:

```
    pip install -r requirements.txt
```

PyPI install, presuming you have all its requirements installed:
```
    pip install hg19genome(not yet!!)
```

## Usage

```python
from hg19genome import Hg19Genome
genome = Hg19Genome()
genome.n_CpGs

genome.n_bases

genome.tss()

genome.tss(upstream=1000, downstream=1000)

```


            

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