# Iseq resources
Scripts that allow you to:
1) Adding a new tool to the JSON file
2) Iterating over the tools in the JSON file and checking the latest version, and in the case of a new version, adding a tooltip to JIRA
3) Update existing tool/database record in JSON after updating tool/database
4) Update docker-versions.json in workflows repository
## Install
```
pip install iseqresources
```
## Requirements
- python >=3.6
- jira >= 3.3.0
- requests >= 2.22.0
- python-gitlab >= 3.7.0
## Adding a new tool
First specify if you want to add tool or database. Input JSON file (`--input-json`) is from gitlab repo at path `json/tools.json` or `json/databases.json`. Default is `json/tools.json`.
```
add_tool --tools
```
or
```
add_tool --databases
```
You can also run on a local file:
```
add_tool \
--input-json "/path/to/json/tools_or_databases.json"
```
It is better to add new tool directly to json file.
## Checking versions and add task to JIRA
Input JSON file (`--input-json` and `--info-json`) are from gitlab repo at path `json/tools.json` or `json/databases.json` and `json/info.json`. Default is `json/tools.json`.
```
check_versions --tools
```
or
```
check_versions --databases
```
You can also run on a local files:
```
check_versions \
--input-json "/path/to/json/tools_or_databases.json" \
--info-json "/path/to/json/info.json"
```
## Update existing tool/database record in JSON
Input JSON file (`--input-json`) is from gitlab repo at path `json/tools.json` or `json/databases.json`. Default is `json/tools.json`.
```
update_record --tools
```
or
```
update_record --databases
```
You can also run on a local file:
```
update_record \
--input-json "/path/to/json/tools_or_databases.json"
```
## Update docker-versions.json in workflows repository (based on tools.json)
After updating tools.json at `json/tools.json` you need to get into root directory of workflows repository and type in bash:
```
update_docker_versions
```
For possible customization options and help use flag `-h`
```
update_docker_versions -h
```
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"description": "# Iseq resources\n\nScripts that allow you to:\n1) Adding a new tool to the JSON file\n2) Iterating over the tools in the JSON file and checking the latest version, and in the case of a new version, adding a tooltip to JIRA\n3) Update existing tool/database record in JSON after updating tool/database\n4) Update docker-versions.json in workflows repository\n\n## Install\n\n```\npip install iseqresources\n```\n\n## Requirements\n\n- python >=3.6\n- jira >= 3.3.0\n- requests >= 2.22.0\n- python-gitlab >= 3.7.0\n\n\n## Adding a new tool\n\nFirst specify if you want to add tool or database. Input JSON file (`--input-json`) is from gitlab repo at path `json/tools.json` or `json/databases.json`. Default is `json/tools.json`.\n\n```\nadd_tool --tools\n```\nor\n```\nadd_tool --databases\n```\n\nYou can also run on a local file:\n\n```\nadd_tool \\\n --input-json \"/path/to/json/tools_or_databases.json\"\n```\n\nIt is better to add new tool directly to json file.\n\n## Checking versions and add task to JIRA\n\nInput JSON file (`--input-json` and `--info-json`) are from gitlab repo at path `json/tools.json` or `json/databases.json` and `json/info.json`. Default is `json/tools.json`.\n\n```\ncheck_versions --tools\n```\nor\n```\ncheck_versions --databases\n```\n\nYou can also run on a local files:\n\n```\ncheck_versions \\\n --input-json \"/path/to/json/tools_or_databases.json\" \\\n --info-json \"/path/to/json/info.json\"\n```\n\n## Update existing tool/database record in JSON\n\nInput JSON file (`--input-json`) is from gitlab repo at path `json/tools.json` or `json/databases.json`. Default is `json/tools.json`.\n\n```\nupdate_record --tools\n```\nor\n```\nupdate_record --databases\n```\n\nYou can also run on a local file:\n\n```\nupdate_record \\\n --input-json \"/path/to/json/tools_or_databases.json\"\n```\n\n## Update docker-versions.json in workflows repository (based on tools.json)\n\nAfter updating tools.json at `json/tools.json` you need to get into root directory of workflows repository and type in bash:\n\n```\nupdate_docker_versions\n```\n\nFor possible customization options and help use flag `-h`\n\n```\nupdate_docker_versions -h\n```\n",
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