Name | itk-dissolve JSON |
Version |
1.0.7
JSON |
| download |
home_page | None |
Summary | This is a module for the Insight Toolkit (ITK) that provides filters to replace regions within a masked region with the surrounding labels. |
upload_time | 2024-08-21 10:04:08 |
maintainer | None |
docs_url | None |
author | None |
requires_python | >=3.8 |
license | MIT License Copyright (c) 2022 IT'IS Foundation Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. |
keywords |
itk
|
VCS |
 |
bugtrack_url |
|
requirements |
No requirements were recorded.
|
Travis-CI |
No Travis.
|
coveralls test coverage |
No coveralls.
|
# ITKDissolve
[](https://github.com/dyollb/ITKDissolve/actions)
[](https://github.com/dyollb/ITKDissolve/blob/main/LICENSE)
[](https://badge.fury.io/py/itk-dissolve)
<img src="https://img.shields.io/pypi/dm/itk-dissolve.svg?label=pypi%20downloads&logo=python&logoColor=green"/>
<img src="https://img.shields.io/badge/python-%203.7%20|%203.8%20|%203.9%20|%203.10%20|%203.11%20-3776ab.svg"/>
## Overview
This is a module for the Insight Toolkit ([ITK](https://github.com/InsightSoftwareConsortium/ITK)) that provides functionality to discard pixels within a masked region. Unlike masking, the pixels in the masked region are replaced (dissolved) by their nearest pixels outside the mask. This can be useful to clean-up label fields, e.g. to remove small islands/holes or remove entire labels, and replace them by the adjacent labels.
The module includes a filter called DissolveMaskImageFilter.
```python
import itk
labels = itk.imread('path/to/labels.mha').astype(itk.US)
mask = itk.imread('path/to/mask.mha').astype(itk.UC)
ImageType = type(labels)
MaskType = type(mask)
dissolve = itk.DissolveMaskImageFilter[ImageType, MaskType].New()
dissolve.SetInput(labels)
dissolve.SetMaskImage(mask)
dissolve.Update()
modified_labels = dissolve.GetOutput()
itk.imwrite(modified_labels, 'modified_labels2.mha')
```
Or using the pythonic API:
```python
import itk
labels = itk.imread('path/to/labels.mha').astype(itk.US)
mask = itk.imread('path/to/mask.mha').astype(itk.US)
modified_labels = itk.dissolve_mask_image_filter(labels, mask_image=mask)
itk.imwrite(modified_labels, 'path/to/modified_labels.mha')
```
## Installation
To install the binary Python packages:
```shell
python -m pip install itk-dissolve
```
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"description": "# ITKDissolve\n\n[](https://github.com/dyollb/ITKDissolve/actions)\n[](https://github.com/dyollb/ITKDissolve/blob/main/LICENSE)\n[](https://badge.fury.io/py/itk-dissolve)\n<img src=\"https://img.shields.io/pypi/dm/itk-dissolve.svg?label=pypi%20downloads&logo=python&logoColor=green\"/>\n<img src=\"https://img.shields.io/badge/python-%203.7%20|%203.8%20|%203.9%20|%203.10%20|%203.11%20-3776ab.svg\"/>\n## Overview\n\nThis is a module for the Insight Toolkit ([ITK](https://github.com/InsightSoftwareConsortium/ITK)) that provides functionality to discard pixels within a masked region. Unlike masking, the pixels in the masked region are replaced (dissolved) by their nearest pixels outside the mask. This can be useful to clean-up label fields, e.g. to remove small islands/holes or remove entire labels, and replace them by the adjacent labels.\n\nThe module includes a filter called DissolveMaskImageFilter.\n\n```python\n import itk\n labels = itk.imread('path/to/labels.mha').astype(itk.US)\n mask = itk.imread('path/to/mask.mha').astype(itk.UC)\n\n ImageType = type(labels)\n MaskType = type(mask)\n\n dissolve = itk.DissolveMaskImageFilter[ImageType, MaskType].New()\n dissolve.SetInput(labels)\n dissolve.SetMaskImage(mask)\n dissolve.Update()\n modified_labels = dissolve.GetOutput()\n\n itk.imwrite(modified_labels, 'modified_labels2.mha')\n```\n\nOr using the pythonic API:\n\n```python\n import itk\n labels = itk.imread('path/to/labels.mha').astype(itk.US)\n mask = itk.imread('path/to/mask.mha').astype(itk.US)\n modified_labels = itk.dissolve_mask_image_filter(labels, mask_image=mask)\n itk.imwrite(modified_labels, 'path/to/modified_labels.mha')\n```\n\n## Installation\n\nTo install the binary Python packages:\n\n```shell\n python -m pip install itk-dissolve\n```\n",
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