landerslabutils


Namelanderslabutils JSON
Version 0.0.2 PyPI version JSON
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home_pagehttps://github.com/albertobrusati/LandersLabUtils
SummaryLanders Lab utilities for ALS compute project
upload_time2024-07-16 16:19:11
maintainerNone
docs_urlNone
authoralberto brusati
requires_pythonNone
licenseMIT
keywords bioinformatic molecular data hail genetics
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requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            LandersLabUtils functions 


Library overview: 



* hail_init(): Initializes a Hail session with specific project and workspace settings. 

* genetable_fromMT(): Filters a Hail MatrixTable by gene and variant type, then exports the results as a TSV file. 

* singlesample_fromMT(): Filters a Hail MatrixTable for a single sample and exports the results as either a table or a VCF file. 

* jointVCF_fromMT(): Filters a Hail MatrixTable by sample groups and exports the results as VCF files for each chromosome. 

* extract_regions(): Filters a Hail MatrixTable based on genomic regions. 




Vignette available at: https://github.com/albertobrusati/LandersLabUtils/LandersLabUtilities.pdf
 
 


			For any doubt, please write to a.brusati@auxologico.it

            

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