# launchcontainers
**Launchcontainers** is a Python-based tool for automatically launching computing works on HPC or local nodes. It helps you:
1. Prepare folder structures and input files automatically
2. Backup the input configs for data provenance
3. Launching containers in BCBL or DIPC
Currently, **launchcontainers** works along with [anatROIs](https://github.com/garikoitz/anatROIs), [RTP-preproc](https://github.com/garikoitz/rtp-preproc), and [RTP2-pipeline](https://github.com/garikoitz/rtp-pipeline).
## NEW FEATURES 0.3.x
Now you can `pip install launchcontainers==0.3.22 ` and use it in the command line!
* Add requests into pyproject.toml, remove version limit to common package such as nibabel and numpy
* Changed rtp/rtp2-preproc multishell option to separateed_shell_files
* Edited lc_config.yaml comment about dask_worker options
* Fixed error message by dask progress (0.3.18)
* launchcontainers --copy_configs "~/path/to/working_directory" will copy the corresponding config files to your specified directory!
* We updated the lc_config.yaml for RTP2-pipelines, please have a look!
check the [How to use]() for more information
# Check also:
* [Home](https://github.com/garikoitz/launchcontainers/wiki/Home)
* [Installation](https://github.com/garikoitz/launchcontainers/wiki/Installation)
* [Manual](https://github.com/garikoitz/launchcontainers/wiki/Manual)
- [Edit configs](https://github.com/garikoitz/launchcontainers/wiki/Manual)
- [Launch `prepare` mode](https://github.com/garikoitz/launchcontainers/wiki/Manual)
- [Launch `run` mode](https://github.com/garikoitz/launchcontainers/wiki/Manual)
* [Reporting, Contribution, and citation](https://github.com/garikoitz/launchcontainers/wiki/Reporting,-Contributing,-and-Citation)
* [Supplement: How to use HeuDiConv](https://github.com/garikoitz/launchcontainers/wiki/How-to-Use-HeuDiConv)
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"description": "\n# launchcontainers\n**Launchcontainers** is a Python-based tool for automatically launching computing works on HPC or local nodes. It helps you: \n1. Prepare folder structures and input files automatically\n2. Backup the input configs for data provenance\n3. Launching containers in BCBL or DIPC\n\nCurrently, **launchcontainers** works along with [anatROIs](https://github.com/garikoitz/anatROIs), [RTP-preproc](https://github.com/garikoitz/rtp-preproc), and [RTP2-pipeline](https://github.com/garikoitz/rtp-pipeline).\n\n## NEW FEATURES 0.3.x\nNow you can `pip install launchcontainers==0.3.22 ` and use it in the command line! \n* Add requests into pyproject.toml, remove version limit to common package such as nibabel and numpy \n* Changed rtp/rtp2-preproc multishell option to separateed_shell_files\n* Edited lc_config.yaml comment about dask_worker options\n* Fixed error message by dask progress (0.3.18)\n* launchcontainers --copy_configs \"~/path/to/working_directory\" will copy the corresponding config files to your specified directory!\n* We updated the lc_config.yaml for RTP2-pipelines, please have a look!\n\ncheck the [How to use]() for more information\n\n# Check also:\n* [Home](https://github.com/garikoitz/launchcontainers/wiki/Home)\n* [Installation](https://github.com/garikoitz/launchcontainers/wiki/Installation)\n* [Manual](https://github.com/garikoitz/launchcontainers/wiki/Manual)\n - [Edit configs](https://github.com/garikoitz/launchcontainers/wiki/Manual)\n - [Launch `prepare` mode](https://github.com/garikoitz/launchcontainers/wiki/Manual)\n - [Launch `run` mode](https://github.com/garikoitz/launchcontainers/wiki/Manual)\n* [Reporting, Contribution, and citation](https://github.com/garikoitz/launchcontainers/wiki/Reporting,-Contributing,-and-Citation)\n* [Supplement: How to use HeuDiConv](https://github.com/garikoitz/launchcontainers/wiki/How-to-Use-HeuDiConv)\n\n",
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