libifcb

Name	libifcb JSON
Version	0.6 JSON
	download
home_page	None
Summary	A Python module for interacting with IFCB data.
upload_time	2025-07-30 10:36:51
maintainer	None
docs_url	None
author	None
requires_python	>=3.6
license	LGPL-3.0
keywords
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # libifcb
A native Python library for working with IFCB data.

## Example
```python
from libifcb import ROIReader
import json

sample = ROIReader("testdata/D20140117T003426_IFCB014.hdr", "testdata/D20140117T003426_IFCB014.adc", "testdata/D20140117T003426_IFCB014.roi")

print(json.dumps(sample.header, indent=4)) # We can read the header, with cleaned variable names, as a dictionary

for trigger in sample.triggers:
    print(json.dumps(trigger.raw, indent=4)) # We can also dump raw trigger data as dictionaries
print(str(len(sample1.rois)) + " ROIs") # How many actual ROIs did we get?

sample.rois[1899].image.save("testout/D20140117T003426_IFCB014_02177.png") # This list only contains valid ROIs - indexes will not match with other software!
sample.rows[2176].image.save("testout/D20140117T003426_IFCB014_02177.tiff") # ADC row indexes start from one, but we start from zero to be pythonic - This will return None types for 0-ROI triggers!
sample.triggers[2102].rois[0].image.save("testout/D20140117T003426_IFCB014_02177.jpeg") # As do trigger indexes, this is trigger #2103

#NB: These are not standard python lists. Image data is only extracted when requested. Image data is extracted as PIL images.
```

            

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