### python liftover utility
Converts point coordinates between genome assemblies.
Inspired by [pyliftover](https://github.com/konstantint/pyliftover), this
offers a few advantages:
- ~5X faster, and lower memory requirements, as loading the chain file and
converting coordinates is implemented in c++.
- dictionary style conversion, as in access converted coordinates via
`converter[chrom][pos]`
### Installation
Install via pip: `pip install liftover`
### Usage
```python
from liftover import get_lifter
converter = get_lifter('hg19', 'hg38', one_based=True)
chrom = '1'
pos = 103786442
converter[chrom][pos]
# other synonyms for the lift call
converter.convert_coordinate(chrom, pos)
converter.query(chrom, pos)
# alternatively create a converter directly from a chainfile
from liftover import ChainFile
converter = ChainFile('/home/user/hg18ToHg38.over.chain.gz', one_based=True)
converter[chrom][pos]
# you can also specify an alternative website to load chain files from
converter = get_lifter('hg19', 'hg38', chain_server='https://www.example.com')
```
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