llama-index-readers-pdb


Namellama-index-readers-pdb JSON
Version 0.1.3 PyPI version JSON
download
home_page
Summaryllama-index readers pdb integration
upload_time2024-02-21 20:38:16
maintainerjoshuakto
docs_urlNone
authorYour Name
requires_python>=3.8.1,<4.0
licenseMIT
keywords protein data bank academic papers pdb proteins
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            # Protein Data Bank (PDB) publication Loader

This loader fetches the abstract of PDB entries using the RCSB (Research Collaboratory for Structural Bioinformatics) or EBI (European Bioinformatics Institute) REST api.

## Usage

To use this loader, simply pass an array of PDB ids into `load_data`:

```python
from llama_hub.pdb import PdbAbstractReader

loader = PdbAbstractReader()
documents = loader.load_data(pdb_id=["1cbs"])
```

This loader is designed to be used as a way to load data into [LlamaIndex](https://github.com/run-llama/llama_index/tree/main/llama_index) and/or subsequently used as a Tool in a [LangChain](https://github.com/hwchase17/langchain) Agent. See [here](https://github.com/emptycrown/llama-hub/tree/main) for examples.

            

Raw data

            {
    "_id": null,
    "home_page": "",
    "name": "llama-index-readers-pdb",
    "maintainer": "joshuakto",
    "docs_url": null,
    "requires_python": ">=3.8.1,<4.0",
    "maintainer_email": "",
    "keywords": "Protein Data Bank,academic papers,pdb,proteins",
    "author": "Your Name",
    "author_email": "you@example.com",
    "download_url": "https://files.pythonhosted.org/packages/2c/83/ec5a579d56e3aab89e34bad3edd2716730044839357ab8782ad0f9a9022a/llama_index_readers_pdb-0.1.3.tar.gz",
    "platform": null,
    "description": "# Protein Data Bank (PDB) publication Loader\n\nThis loader fetches the abstract of PDB entries using the RCSB (Research Collaboratory for Structural Bioinformatics) or EBI (European Bioinformatics Institute) REST api.\n\n## Usage\n\nTo use this loader, simply pass an array of PDB ids into `load_data`:\n\n```python\nfrom llama_hub.pdb import PdbAbstractReader\n\nloader = PdbAbstractReader()\ndocuments = loader.load_data(pdb_id=[\"1cbs\"])\n```\n\nThis loader is designed to be used as a way to load data into [LlamaIndex](https://github.com/run-llama/llama_index/tree/main/llama_index) and/or subsequently used as a Tool in a [LangChain](https://github.com/hwchase17/langchain) Agent. See [here](https://github.com/emptycrown/llama-hub/tree/main) for examples.\n",
    "bugtrack_url": null,
    "license": "MIT",
    "summary": "llama-index readers pdb integration",
    "version": "0.1.3",
    "project_urls": null,
    "split_keywords": [
        "protein data bank",
        "academic papers",
        "pdb",
        "proteins"
    ],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "af6a8f0191ead89ae2bf917160ee4426160cce476cd4b2735a7139cdfbcf11a0",
                "md5": "c3ec224840e8c86f541ae6af1c245fa5",
                "sha256": "4460eab2e8d60d0411dbacbbe0d2261d74d4c12d1c4104539d8d363a033e03bc"
            },
            "downloads": -1,
            "filename": "llama_index_readers_pdb-0.1.3-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "c3ec224840e8c86f541ae6af1c245fa5",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": ">=3.8.1,<4.0",
            "size": 3428,
            "upload_time": "2024-02-21T20:38:14",
            "upload_time_iso_8601": "2024-02-21T20:38:14.414228Z",
            "url": "https://files.pythonhosted.org/packages/af/6a/8f0191ead89ae2bf917160ee4426160cce476cd4b2735a7139cdfbcf11a0/llama_index_readers_pdb-0.1.3-py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "2c83ec5a579d56e3aab89e34bad3edd2716730044839357ab8782ad0f9a9022a",
                "md5": "6a7100c31742cc25a42a538afbbd7eb5",
                "sha256": "f19cd86adc2f797932d9a7bd3bcd9b224f4adbac752099b9a551cfb7466bee9c"
            },
            "downloads": -1,
            "filename": "llama_index_readers_pdb-0.1.3.tar.gz",
            "has_sig": false,
            "md5_digest": "6a7100c31742cc25a42a538afbbd7eb5",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": ">=3.8.1,<4.0",
            "size": 2994,
            "upload_time": "2024-02-21T20:38:16",
            "upload_time_iso_8601": "2024-02-21T20:38:16.199247Z",
            "url": "https://files.pythonhosted.org/packages/2c/83/ec5a579d56e3aab89e34bad3edd2716730044839357ab8782ad0f9a9022a/llama_index_readers_pdb-0.1.3.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-02-21 20:38:16",
    "github": false,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "lcname": "llama-index-readers-pdb"
}
        
Elapsed time: 0.21958s