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* @Author: BHM-Bob 2262029386@qq.com
* @Date: 2022-10-19 22:16:22
* @LastEditors: BHM-Bob 2262029386@qq.com
* @LastEditTime: 2024-10-19 16:38:17
* @Description:
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<h1 style="text-align:center;">BA_PY: Optimize Your Workflow with Python!</h1>
<p style="text-align:center;">
<a href="https://www.pepy.tech/projects/mbapy"><img src="https://static.pepy.tech/badge/mbapy" alt="Downloads" style="display:inline-block; margin-left:auto; margin-right:auto;" /></a>
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<a href="https://github.com/BHM-Bob/BA_PY/"><img src="https://img.shields.io/github/repo-size/BHM-Bob/BA_PY" alt="repo size" style="display:inline-block; margin-left:auto; margin-right:auto;" /></a>
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<p style="text-align:center;">
<a href="https://pypi.org/project/mbapy/"><img src="https://img.shields.io/pypi/status/mbapy?label=PyPI%20Status" alt="PyPI Status" style="display:inline-block; margin-left:auto; margin-right:auto;" /></a>
<a href="https://pypi.org/project/mbapy/"><img src="https://img.shields.io/pypi/v/mbapy?label=PyPI%20Release" alt="PyPI" style="display:inline-block; margin-left:auto; margin-right:auto;" /></a>
<a href="https://pypi.org/project/mbapy/"><img src="https://img.shields.io/pypi/pyversions/mbapy" alt="python versions" style="display:inline-block; margin-left:auto; margin-right:auto;" /></a>
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</p>
mbapy is a Python package that includes a collection of useful Python scripts as sub-modules, and it's goal is *Basic for All in Python*.
mbapy primarily focus on data works, including data-retrieval, data-management, data-visualization, data-analysis and data-computation. It is built for both python-users and command-line-users.
<h2 style="text-align:center;">Get start</h2>
#### install
Now, mbapy only support pypi install:
```
pip install mbapy
```
mbapy is a multi-funtional package, and it does not require every third-party packages to make every sub-module work. However, it provides some requriements option to install more specified requirements to make some sub-modules work:
1. bio: some packages for biology(sci).
install as `pip install mbapy[bio]`
2. game: some packages for game(pygame).
install as `pip install mbapy[game]`
3. full: full requirements to make almost every sub-module in mbapy work(except dl_torch).
install as `pip install mbapy[full]`
If you find the latest release version has some problems, you can try install the up-to-date version on github or gitee:
```
pip install git+https://github.com/BHM-Bob/BA_PY.git
```
```
pip install git+https://gitee.com/BHM-Bob/BA_PY.git
```
#### docs
The documentation for mbapy can be found on [read the docs](https://ba-py.readthedocs.io/en/latest/) or just in the `docs` folder.
#### web sites
- open source at:
1. [github： https://github.com/BHM-Bob/BA_PY](https://github.com/BHM-Bob/BA_PY)
2. [gitee： https://gitee.com/BHM-Bob/BA_PY](https://gitee.com/BHM-Bob/BA_PY)
3. [SourceForge： https://sourceforge.net/projects/ba-py/](https://sourceforge.net/projects/ba-py/)
- docs at: [read the docs: https://ba-py.rtfd.io](https://ba-py.readthedocs.io/en/latest/)
- PyPI: [https://pypi.org/project/mbapy/](https://pypi.org/project/mbapy/)
<h2 style="text-align:center;">Contents</h2>
# mbapy python package
### \_\_version\_\_
*some version info*
### base
*some utils for easier coding*
### file
##### image
*imgae utils*, including reading, saving and process a image into a feature tensor via pytorch.
##### video
*video utils*, including extract frames or unique frames from a video.
### plot
*pandas.dataFrame utils for plot and some simple plot based on plt*
### web
*utils for web-crawler*
##### request
*get a web hyml page or a selenium browser warpper for easier usage*.
##### parse
*utils for parsing html*
##### task
*small task manager*
##### spider
*a light-weight web spider architecture*
### stats
##### cluster
*BAKmeans, KOptim, KBayesian from KMeans, and a func for many cluster*
##### df
*pandas.dataFrame utils for stats*
##### reg
*regression*
##### test
*some test func(using scipy and mostly give a support for mbapy-style data input)*
### dl-torch
*pytorch utils for deeplearning*
##### bb
*basic blocks : tiny network structures*
##### data
*utils for dataset loading*
##### loss
*some loss function*
##### m
*model : deeplearning model constructed with basic blocks*
##### utils
*deeplearning training utils*
##### optim
*learning rate scheduler*
### paper
*sci-paper utils, contains paper searching, downloading and parsing*
##### paper_search
*search papers via pubmed, baidu xueshu, wos*
##### paper_download
*download papers via scihub*
##### paper_parse
*parse paper from a pdf file into a dict of each sections*
### bio
##### peptide
*class and funcs to calcu peptide MW, mutations*
##### high_level
*some high-level utils for bio*
### sci_instrument
##### hplc
*HPLC instrument data processing and visualization*
##### mass
*mass spectrometry instrument data processing and visualization*
#### scripts
*some useful scripts for command user*
launch by `python -m mbapy.scripts.XXX` or `mbapy-cli XXX`.
## examples
#### web/crawler
1. chaoxin ppt multi threads downloader (jpg->pdf)
2. wujin search http://www.basechem.org
3. chemSub search http://chemsub.online.fr
4. cnipa https://pss-system.cponline.cnipa.gov.cn/seniorSearch
## Additional Info
### Requirements
1. mbapy requires python 3.8~3.11 because of the use of type hint and require matplotlib>=3.7.5, and the developer do not test it on other python version.
2. mbapy only requires a part of third-party packages in a specific version. This is because the developer do not want to make a big change during the installation. Bellow are the specific requirements:
- `matplotlib>=3.7.5`: HPLC and Mass data visualization need set legend `draggable`, this is only supported in 3.7+
- `seaborn>=0.13.0`: plot_utils.bar_utils.plot_bar need set seaborn stripplot `native_scale`, this is only supported in 0.13+
- `nicegui[highcharts]`: scripts/hplc: explore-hplc need a highcharts as interactive plot for manual peaking.
- `torch any`: though dl_torch is important for mbapy, but the developer kowns torch is a big package, and do not has a specific function requirement.
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It is built for both python-users and command-line-users.\n\n<h2 style=\"text-align:center;\">Get start</h2>\n\n#### install \nNow, mbapy only support pypi install: \n```\npip install mbapy\n```\n\nmbapy is a multi-funtional package, and it does not require every third-party packages to make every sub-module work. However, it provides some requriements option to install more specified requirements to make some sub-modules work: \n1. bio: some packages for biology(sci). \n install as `pip install mbapy[bio]` \n2. game: some packages for game(pygame). \n install as `pip install mbapy[game]` \n3. full: full requirements to make almost every sub-module in mbapy work(except dl_torch). \n install as `pip install mbapy[full]` \n\nIf you find the latest release version has some problems, you can try install the up-to-date version on github or gitee: \n```\npip install git+https://github.com/BHM-Bob/BA_PY.git\n```\n```\npip install git+https://gitee.com/BHM-Bob/BA_PY.git\n```\n\n#### docs\nThe documentation for mbapy can be found on [read the docs](https://ba-py.readthedocs.io/en/latest/) or just in the `docs` folder.\n\n#### web sites\n- open source at: \n 1. [github\uff1a https://github.com/BHM-Bob/BA_PY](https://github.com/BHM-Bob/BA_PY) \n 2. [gitee\uff1a https://gitee.com/BHM-Bob/BA_PY](https://gitee.com/BHM-Bob/BA_PY) \n 3. [SourceForge\uff1a https://sourceforge.net/projects/ba-py/](https://sourceforge.net/projects/ba-py/)\n- docs at: [read the docs: https://ba-py.rtfd.io](https://ba-py.readthedocs.io/en/latest/) \n- PyPI: [https://pypi.org/project/mbapy/](https://pypi.org/project/mbapy/) \n\n<h2 style=\"text-align:center;\">Contents</h2>\n\n# mbapy python package \n### \\_\\_version\\_\\_ \n*some version info* \n\n### base \n*some utils for easier coding*\n\n### file\n##### image\n*imgae utils*, including reading, saving and process a image into a feature tensor via pytorch. \n##### video\n*video utils*, including extract frames or unique frames from a video. \n\n### plot\n*pandas.dataFrame utils for plot and some simple plot based on plt* \n\n### web\n*utils for web-crawler* \n##### request\n*get a web hyml page or a selenium browser warpper for easier usage*. \n##### parse\n*utils for parsing html* \n##### task\n*small task manager* \n##### spider\n*a light-weight web spider architecture* \n\n### stats\n##### cluster\n*BAKmeans, KOptim, KBayesian from KMeans, and a func for many cluster* \n##### df\n*pandas.dataFrame utils for stats* \n##### reg\n*regression* \n##### test\n*some test func(using scipy and mostly give a support for mbapy-style data input)* \n\n### dl-torch\n*pytorch utils for deeplearning* \n##### bb\n*basic blocks : tiny network structures* \n##### data\n*utils for dataset loading* \n##### loss\n*some loss function* \n##### m\n*model : deeplearning model constructed with basic blocks* \n##### utils\n*deeplearning training utils* \n##### optim\n*learning rate scheduler*\n\n### paper\n*sci-paper utils, contains paper searching, downloading and parsing* \n##### paper_search\n*search papers via pubmed, baidu xueshu, wos* \n##### paper_download\n*download papers via scihub* \n##### paper_parse\n*parse paper from a pdf file into a dict of each sections* \n\n### bio\n##### peptide\n*class and funcs to calcu peptide MW, mutations*\n##### high_level\n*some high-level utils for bio*\n\n### sci_instrument\n##### hplc\n*HPLC instrument data processing and visualization*\n##### mass\n*mass spectrometry instrument data processing and visualization*\n\n#### scripts\n*some useful scripts for command user* \nlaunch by `python -m mbapy.scripts.XXX` or `mbapy-cli XXX`. \n\n## examples\n#### web/crawler\n1. chaoxin ppt multi threads downloader (jpg->pdf)\n2. wujin search http://www.basechem.org\n3. chemSub search http://chemsub.online.fr\n4. cnipa https://pss-system.cponline.cnipa.gov.cn/seniorSearch\n\n## Additional Info\n### Requirements\n1. mbapy requires python 3.8~3.11 because of the use of type hint and require matplotlib>=3.7.5, and the developer do not test it on other python version. \n2. mbapy only requires a part of third-party packages in a specific version. This is because the developer do not want to make a big change during the installation. Bellow are the specific requirements: \n- `matplotlib>=3.7.5`: HPLC and Mass data visualization need set legend `draggable`, this is only supported in 3.7+ \n- `seaborn>=0.13.0`: plot_utils.bar_utils.plot_bar need set seaborn stripplot `native_scale`, this is only supported in 0.13+ \n- `nicegui[highcharts]`: scripts/hplc: explore-hplc need a highcharts as interactive plot for manual peaking. \n- `torch any`: though dl_torch is important for mbapy, but the developer kowns torch is a big package, and do not has a specific function requirement.",
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