| Name | mbo_utilities JSON |
| Version |
1.0.3
JSON |
| download |
| home_page | None |
| Summary | Various utilities for the Miller Brain Observatory |
| upload_time | 2025-07-30 14:32:54 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | <3.13,>=3.11 |
| license | None |
| keywords |
microscopy
scanimage
multiroi
tiff
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# MBO Utilities
General Python and shell utilities developed for the Miller Brain Observatory (MBO) workflows.
[](https://millerbrainobservatory.github.io/mbo_utilities/)
Most functions have examples in docstrings.
Converting scanimage tiffs into intermediate filetypes for preprocessing or to use with Suite2p is covered [here](https://millerbrainobservatory.github.io/mbo_utilities/assembly.html).
Function examples [here](https://millerbrainobservatory.github.io/mbo_utilities/api/usage.html) are a work in progress.
---
## Installation
This package is fully installable with `pip`.
`conda` can still be used for the virtual environment, but be mindful to only install packages with `conda install` when absolutely necessary.
``` bash
# make sure your environment is activated, be that conda, venv, uv venv (stick to these)
pip install mbo_utilities
```
To get the latest version:
```bash
pip install git+https://github.com/MillerBrainObservatory/mbo_utilities.git@master
```
---
## Acknowledgements
Thank you to the developers of [scanreader](https://github.com/atlab/scanreader) and the broader open-source community.
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