metadownload

Name	metadownload JSON
Version	0.1.3 JSON
	download
home_page	https://github.com/hbucqp/metadownload
Summary	python mlst analysis tool
upload_time	2023-01-11 06:17:54
maintainer
docs_url	None
author	Qingpo Cui
requires_python
license	MIT Licence
keywords	wgs pubmlst mlst
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # metadownload
此脚本为下载NCBI中biosample相关字段信息的python脚本


## Installation
```
pip3 install metadownload
```

## Dependency
- [E-utilities](https://www.ncbi.nlm.nih.gov/books/NBK179288/)

**you should add E-utilities in your PATH**

E-utilities install:

```
sh -c "$(curl -fsSL ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/install-edirect.sh)"

sh -c "$(wget -q ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/install-edirect.sh -O -)"
```

## Usage

```
usage: metadownload -list <biosample_acc_list> -outdir <output>

Author: Qingpo Cui(SZQ Lab, China Agricultural University)

optional arguments:
  -h, --help      show this help message and exit
  -list LIST      <file>: biosample_acc_list, one accession per line
  -outdir OUTDIR  <path>: output directory name
  -v, --version   Display version
```

## Output

You will get text file contains metainfo for each biosample accession named with the accession number and a csv format summary file



            

Raw data

            {
    "_id": null,
    "home_page": "https://github.com/hbucqp/metadownload",
    "name": "metadownload",
    "maintainer": "",
    "docs_url": null,
    "requires_python": "",
    "maintainer_email": "",
    "keywords": "wgs,pubmlst,mlst",
    "author": "Qingpo Cui",
    "author_email": "cqp@cau.edu.cn",
    "download_url": "https://files.pythonhosted.org/packages/79/20/c95d3d686044d23e1b0aae48e7f2c8350089978802bd544fee35aa17c97b/metadownload-0.1.3.tar.gz",
    "platform": "any",
    "description": "# metadownload\n\u6b64\u811a\u672c\u4e3a\u4e0b\u8f7dNCBI\u4e2dbiosample\u76f8\u5173\u5b57\u6bb5\u4fe1\u606f\u7684python\u811a\u672c\n\n\n## Installation\n```\npip3 install metadownload\n```\n\n## Dependency\n- [E-utilities](https://www.ncbi.nlm.nih.gov/books/NBK179288/)\n\n**you should add E-utilities in your PATH**\n\nE-utilities install:\n\n```\nsh -c \"$(curl -fsSL ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/install-edirect.sh)\"\n\nsh -c \"$(wget -q ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/install-edirect.sh -O -)\"\n```\n\n## Usage\n\n```\nusage: metadownload -list <biosample_acc_list> -outdir <output>\n\nAuthor: Qingpo Cui(SZQ Lab, China Agricultural University)\n\noptional arguments:\n  -h, --help      show this help message and exit\n  -list LIST      <file>: biosample_acc_list, one accession per line\n  -outdir OUTDIR  <path>: output directory name\n  -v, --version   Display version\n```\n\n## Output\n\nYou will get text file contains metainfo for each biosample accession named with the accession number and a csv format summary file\n\n\n",
    "bugtrack_url": null,
    "license": "MIT Licence",
    "summary": "python mlst analysis tool",
    "version": "0.1.3",
    "split_keywords": [
        "wgs",
        "pubmlst",
        "mlst"
    ],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "6c30c040bf8afce0853df0317e9d71b09fa142b2b62f446ad5c7e432edb29c88",
                "md5": "41813450951de5cd66b300a8cffde7d6",
                "sha256": "538f9376ffa3a9021135e9e6c21b610b63478f7eae26bc1ed2cdf1eb7e4478a2"
            },
            "downloads": -1,
            "filename": "metadownload-0.1.3-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "41813450951de5cd66b300a8cffde7d6",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": null,
            "size": 4176,
            "upload_time": "2023-01-11T06:17:51",
            "upload_time_iso_8601": "2023-01-11T06:17:51.515948Z",
            "url": "https://files.pythonhosted.org/packages/6c/30/c040bf8afce0853df0317e9d71b09fa142b2b62f446ad5c7e432edb29c88/metadownload-0.1.3-py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "7920c95d3d686044d23e1b0aae48e7f2c8350089978802bd544fee35aa17c97b",
                "md5": "66169bed744e1da24d280d981f4e7286",
                "sha256": "d6b2f2cbce15646d321020288b7f3911b78b0e05241666db948eaa2748927c3a"
            },
            "downloads": -1,
            "filename": "metadownload-0.1.3.tar.gz",
            "has_sig": false,
            "md5_digest": "66169bed744e1da24d280d981f4e7286",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 4098,
            "upload_time": "2023-01-11T06:17:54",
            "upload_time_iso_8601": "2023-01-11T06:17:54.879552Z",
            "url": "https://files.pythonhosted.org/packages/79/20/c95d3d686044d23e1b0aae48e7f2c8350089978802bd544fee35aa17c97b/metadownload-0.1.3.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2023-01-11 06:17:54",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "github_user": "hbucqp",
    "github_project": "metadownload",
    "lcname": "metadownload"
}