metagentools
================
<!-- WARNING: THIS FILE WAS AUTOGENERATED! DO NOT EDIT! -->
This repo includes the code developed as part of a research project
aiming at using deep learning techniques to classify a wide range of
corona virus based on NG reads.
The code is structured into *general code* and *submodules*:
***General code*** is used across the project and can also be reused for
other projects:
1. `art`: wrapper code to use ART-ILLUMINA read simulator package from
a jupyter notebook. MUST BE RUN LOCALLY.
2. `core`: base classes used accross the package
3. `wandb`: utility classes to open, retrieve, use WandB runs and
artifacts accross the project
***Submodules*** cover code written for a specific part of the project
1. `cnn_virus`: all specific code related to the evaluation and
improvement of CNN Virus model
- `architecture`: all code related to evaluated and trained
architectures
- `data`: data processing, iterators and parsing functions to handle
data
- `utils`: other utility functions
This is a work in progress, and some functions or modules may be broken.
We may or may not be able to provide support depending on the when the
support is requested.
***Installation***:
- `pip install metagentools` for the stable version
- `pip install git+https://github.com/vtecftwy/metagentools.git@main`
for the latest committed version
***Requirements***:
- python 3.8 or higher is required for this package
- package tested with python 3.10
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