Name | microtiff JSON |
Version |
0.0.3
JSON |
| download |
home_page | None |
Summary | A Python module and CLI tool for converting proprietary microscopy formats to TIFF with JSON metadata sidecar files. |
upload_time | 2025-01-24 13:41:56 |
maintainer | None |
docs_url | None |
author | None |
requires_python | >=3.8 |
license | LGPL-3.0 |
keywords |
|
VCS |
 |
bugtrack_url |
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requirements |
No requirements were recorded.
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Travis-CI |
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# microtiff
A Python module and CLI tool for converting proprietary microscopy formats to TIFF with JSON metadata sidecar files.
## Installation
Microtiff is installable via PIP:
```pip install microtiff```
## Supported data types
Both supported modules and modules working with errata are listed below.
| Sensor | Status | Errata/Notes |
| --- | --- | --- |
| Imaging FlowCytobot/IFCB (.adc, .hdr, .roi) | :white_check_mark: | |
| LISST-Holo (.pgm) | :white_check_mark: | Only extracts raw interference field, does not reconstruct images. Metadata export broken. |
| LISST-Holo2 (.pgm) | :white_check_mark: | See above |
| FlowCam | :x: | In active development |
## Dependencies
- pillow
- numpy
## Acknowledgements
Made with the help of: [Sari Giering](https://github.com/sarigiering), [Will Major](https://github.com/obg-wrm) and [Mojtaba Masoudi](https://github.com/Mojtabamsd)
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