midap

Name	midap JSON
Version	1.0.1 JSON
	download
home_page	None
Summary	A package for cell segmentation and tracking.
upload_time	2024-11-27 11:33:08
maintainer	None
docs_url	None
author	Oschmann Franziska, Fluri Janis
requires_python	<4,>=3.9
license	None
keywords	segmentation tracking biology
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # MIDAP: Automated image segmentation and tracking for time-lapse microscopy of bacterial cells.

MIDAP is a flexible and user-friendly software for the automated analysis of
live-cell microscopy images of bacteria growing in a monolayer in microfluidics
chambers.

Through its graphical user interface, a selection of state-of-the-art
segmentation and tracking tools are provided, allowing the user to select the
most suited ones for their particular data set. Thanks to its modular
structure, additional segmentation and tracking tools can easily be integrated
as they are becoming available. After running the automated image analysis, the
user has the option to visually inspect and, if needed, manually correct
segmentation and tracking.

Documentation at https://github.com/Microbial-Systems-Ecology/midap/wiki
    

            

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