morphomatics

Name	morphomatics JSON
Version	4.0 JSON
	download
home_page	https://morphomatics.github.io/
Summary	Geometric morphometrics in non-Euclidean shape spaces
upload_time	2024-10-02 10:01:57
maintainer	None
docs_url	None
author	Christoph von Tycowicz et al.
requires_python	None
license	MIT License
keywords	shape analysis morphometrics geometric statistics
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            <div align="center">
<img src="https://github.com/morphomatics/morphomatics.github.io/blob/master/images/logo_cyan.png?raw=true" width="250" alt="Morphomatics"/>
</div>

# Morphomatics: Geometric morphometrics in non-Euclidean shape spaces

Morphomatics is an open-source Python library for (statistical) shape analysis developed within the [geometric data analysis and processing](https://www.zib.de/visual/geometric-data-analysis-and-processing) research group at Zuse Institute Berlin.
It contains prototype implementations of intrinsic manifold-based methods that are highly consistent and avoid the influence of unwanted effects such as bias due to arbitrary choices of coordinates.

Detailed information and tutorials can be found at https://morphomatics.github.io/

## Installation

Morphomatics can be installed directly from github using the following command:
```
pip install git+https://github.com/morphomatics/morphomatics.git#egg=morphomatics
```
For instructions on how to set up `jaxlib`, please refer to the [JAX install guide](https://github.com/google/jax#installation).

## Dependencies
* jax/jaxlib
* jraph
* flax
* optax

Optional
* pymanopt
* sksparse

            

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