mousebrains

Name	mousebrains JSON
Version	0.0.2 JSON
	download
home_page	https://github.com/navis/navis-mousebrains
Summary	Transforms to map between different mouse (template) brains
upload_time	2024-06-12 05:13:14
maintainer	None
docs_url	None
author	Philipp Schlegel
requires_python	>=3.9
license	GNU GPL V3
keywords	mouse brains template registration brain navis transform
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # navis-mousebrains
Transforms and meta data to map between different mouse template brains. This package is intended to be used with [navis](https://github.com/schlegelp/navis) and is analogous to [`navis-flybrains`](https://github.com/schlegelp/navis-flybrains).

Currently `mousebrains` ships with:

- meta data and surface meshes the Allen CCF mouse brain template

## Installation
You can install `mousebrains` from PyPI:

```bash
pip3 install mousebrains
```

To install the dev version from Github:
```bash
pip3 install git+https://github.com/navis-org/navis-mousebrains.git
```

### External dependencies
In order to use CMTK-based transforms, you will need to have
[CMTK](https://www.nitrc.org/projects/cmtk/) installed.

For the Elastix-based transforms, you will need to download
[elastix](https://elastix.lumc.nl/index.php) and make sure that the path
to the binaries is in your `PATH` variable.

## Usage

TODO

## Changes

TODO

## Acknowledgements

TODO

## Citing

TODO

When in doubt, feel free to open an [issue](https://github.com/navis-org/navis-mousebrains/issues/new) to ask for advice.

            

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