Mutalyzer HGVS Parser
=====================
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----
Package to syntax check and convert Mutalyzer HGVS variant descriptions into
a dictionary model to easily access descriptions information in a
programmatically manner.
**Features:**
- Accepts HGVS descriptions with multiple variants (one HGVS allele).
- Any description sub-part can be parsed and converted as well.
- Supports common deviations to the HGVS guidelines.
- Command line and library interfaces available.
Quick start
-----------
Parse and convert a description from the command line:
.. code-block:: console
$ mutalyzer_hgvs_parser -c "NG_012337.1:c.20del"
{
"reference": {
"id": "NG_012337.1"
},
"coordinate_system": "c",
"variants": [
{
"location": {
"type": "point",
"position": 20
},
"type": "deletion",
"source": "reference"
}
]
}
The ``to_model()`` function can be used for the same purpose:
.. code:: python
>>> from mutalyzer_hgvs_parser import to_model
>>> model = to_model("NG_012337.1:c.20del")
>>> model['reference']
{'id': 'NG_012337.1'}
Please see ReadTheDocs_ for the latest documentation.
.. _ReadTheDocs: https://mutalyzer-hgvs-parser.readthedocs.io/en/latest/
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