| Name | mxlbricks JSON |
| Version |
0.5.0
JSON |
| download |
| home_page | None |
| Summary | A package to build metabolic models |
| upload_time | 2025-07-21 15:53:05 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.12 |
| license | None |
| keywords |
metabolic
modelling
ode
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
<p align="center">
<img src="https://raw.githubusercontent.com/Computational-Biology-Aachen/mxl-bricks/refs/heads/main/docs/assets/logo.png" width="400px" alt='mxlbricks-logo'>
</p>
# MxlBricks
[](https://pypi.python.org/pypi/mxlbricks)
[![docs][docs-badge]][docs]
[](https://github.com/astral-sh/ruff)
[](https://github.com/PyCQA/bandit)
[](https://pepy.tech/projects/mxlbricks)
[docs-badge]: https://img.shields.io/badge/docs-main-green.svg?style=flat-square
[docs]: https://computational-biology-aachen.github.io/mxl-bricks/
## Installation
You can install mxlpy using pip: `pip install mxlbricks`.
If you want access to the sundials solver suite via the [assimulo](https://jmodelica.org/assimulo/) package, we recommend setting up a virtual environment via [pixi](https://pixi.sh/) or [mamba / conda](https://mamba.readthedocs.io/en/latest/) using the [conda-forge](https://conda-forge.org/) channel.
```bash
pixi init
pixi add python assimulo
pixi add --pypi mxlbricks
```
## Development setup
Install pixi [as described in the docs](https://pixi.sh/latest/#installation).
Run
```
pixi instal
```
## Models
| Name | Description |
| -------------------- | --------------------------------------------------------------------------- |
| Ebenhöh 2011 | PSII & two-state quencher & ATP synthase |
| Ebenhöh 2014 | PETC & state transitions & ATP synthase from Ebenhoeh 2011 |
| Matuszyńska 2016 NPQ | 2011 + PSII & four-state quencher |
| Matuszyńska 2016 PhD | ? |
| Matuszyńska 2019 | Merges PETC (Ebenhöh 2014), NPQ (Matuszynska 2016) and CBB (Poolman 2000) |
| Saadat 2021 | 2019 + Mehler (Valero ?) & Thioredoxin & extendend PSI states & consumption |
| van Aalst 2023 | Saadat 2021 & Yokota 1985 & Witzel 2010 |
## References
| Name | Description |
| ------------ | ----------------------------------------------------- |
| Poolman 2000 | CBB cycle, based on Pettersson & Ryde-Pettersson 1988 |
| Yokota 1985 | Photorespiration |
| Valero ? | |
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