# napari-crop
[](https://github.com/BiAPoL/napari-crop/raw/master/LICENSE)
[](https://pypi.org/project/napari-crop)
[](https://python.org)
[](https://github.com/BiAPoL/napari-crop/actions)
[](https://codecov.io/gh/BiAPoL/napari-crop)
[](https://zenodo.org/badge/latestdoi/419822240)
Crop regions in napari manually
Crop in any dimension
Cut a volume using a plane
*Note: this functionality currently only works with 3D data*
## Usage
Create a new shapes layer to annotate the region you would like to crop:
Use the rectangle tool to annotate a region. Start the `crop` tool from the `Tools > Utilities > Crop region` menu.
Click the `Run` button to crop the region.
You can also use the `Select shapes` tool to move the rectangle to a new place and crop another region by clicking on `Run`.
Hint: You can also use the [napari-tabu](https://www.napari-hub.org/plugins/napari-tabu) plugin to send all your cropped images to a new napari window.
----------------------------------
This [napari] plugin was generated with [Cookiecutter] using with [@napari]'s [cookiecutter-napari-plugin] template.
## Installation
You can install `napari-crop` via [pip]:
pip install napari-crop
## Contributing
Contributions are very welcome.
## License
Distributed under the terms of the [BSD-3] license,
"napari-crop" is free and open source software
## Issues
If you encounter any problems, please create a thread on [image.sc] along with a detailed description and tag [@haesleinhuepf].
[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin
[file an issue]: https://github.com/BiAPoL/napari-crop/issues
[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/
[image.sc]: https://image.sc
[@haesleinhuepf]: https://twitter.com/haesleinhuepf
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