# napari-seedseg
[](https://github.com/rezaakb/napari-seedseg/tree/main/LICENSE)
[](https://pypi.org/project/napari-seedseg)
[](https://python.org)
[](https://github.com/rezaakb/napari-seedseg/actions)
[](https://codecov.io/gh/rezaakb/napari-seedseg)
[](https://napari-hub.org/plugins/napari-seedseg)
A simple plugin for 2D medical image segmentation. In this project, we are trying to use Flood method for segmentation.
Flood segmentation, also known as flood fill or region growing, is an image segmentation technique that starts from a seed point and expands to neighboring pixels with similar properties (e.g., intensity, color). In our project, you only can segment one label at the time. Below is a description of the repository's structure and the purpose of each file:
.
├── setup.cfg # package metadata
├── pyproject.toml # use setuptools
├── src/napari_seedseg
│ ├── napari.yaml # Load and stress tests
│ ├── __init.py__ # Python package metadata files
│ ├── _widget.py # Widget contributions
│ ├── _layers.py # Layers contributions
│ └── _method.py # Methods contributions
└── ...
----------------------------------
This [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.
<!--
Don't miss the full getting started guide to set up your new package:
https://github.com/napari/cookiecutter-napari-plugin#getting-started
and review the napari docs for plugin developers:
https://napari.org/stable/plugins/index.html
-->
## Installation
You can install `napari-seedseg` via [pip]:
pip install napari-seedseg
To install latest development version :
pip install git+https://github.com/rezaakb/napari-seedseg.git
## Packages
In this project we have used these packages:
numpy
magicgui
qtpy
opencv-python-headless
scikit-image>=0.19.3
## Contributing
Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.
## License
Distributed under the terms of the [BSD-3] license,
"napari-seedseg" is free and open source software
## Issues
If you encounter any problems, please [file an issue] along with a detailed description.
[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin
[file an issue]: https://github.com/rezaakb/napari-seedseg/issues
[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/
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