# Packager
A command-line tool for managing Singularity images and creating executable bundles.
## Installation
```bash
pip install .
```
## Configuration
The configuration file is stored at `~/.config/packager.ini`:
```ini
[packager]
singularity_path = /path/to/images
bin_path = /path/to/bin
packages_path = /path/to/packages
[images]
# This section is automatically populated by the tool
```
## Usage
### Add a set of singularity images
```bash
# From singularity_path
packager scanpackages
# From custom path
packager scanpackages --dir /qib/platforms/Informatics/transfer/outgoing/singularity/core
```
### Add single singularity image as package
```bash
bashpackager addpackage --image /path/to/image.simg --name mypackage --version 1.0.0
```
### Create a "HPC package" (bundle)
```bash
# Make an empty bundle
packager makebundle --name mybundle
# Make a bundle with one or more packages
packager makebundle --name denovo megahit=1.2.9 fastp=1.20.0
```
### Add package to bundle
```bash
# By default each package is exposed as a binary called package. You can add "aliases" i.e. each binary to expose
packager addtobundle --name mybundle --package blast --version 1.0 blastn makeblastdb blastp
```
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