ncbi-datasets-util


Namencbi-datasets-util JSON
Version 0.3.0 PyPI version JSON
download
home_pagehttps://github.com/$GIT_USER_NAME/ncbi_datasets_util
SummaryTODO
upload_time2025-02-04 15:33:36
maintainerNone
docs_urlNone
author$GIT_USER_NAME
requires_python>=3.7
licenseMIT License
keywords nbdev jupyter notebook python
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            # ncbi_datasets_util


<!-- WARNING: THIS FILE WAS AUTOGENERATED! DO NOT EDIT! -->

This file will become your README and also the index of your
documentation.

## Developer Guide

If you are new to using `nbdev` here are some useful pointers to get you
started.

### Install ncbi_datasets_util in Development mode

``` sh
# make sure ncbi_datasets_util package is installed in development mode
$ pip install -e .

# make changes under nbs/ directory
# ...

# compile to have changes apply to ncbi_datasets_util
$ nbdev_prepare
```

## Usage

### Installation

Install latest from the GitHub
[repository](https://github.com/$GIT_USER_NAME/ncbi_datasets_util):

``` sh
$ pip install git+https://github.com/$GIT_USER_NAME/ncbi_datasets_util.git
```

or from [conda](https://anaconda.org/$GIT_USER_NAME/ncbi_datasets_util)

``` sh
$ conda install -c $GIT_USER_NAME ncbi_datasets_util
```

or from [pypi](https://pypi.org/project/ncbi_datasets_util/)

``` sh
$ pip install ncbi_datasets_util
```

If ncbi-datasets-cli does not run properly, install from conda

``` sh
$ conda install bioconda:ncbi-datasets-cli
```

### Documentation

Documentation can be found hosted on this GitHub
[repository](https://github.com/$GIT_USER_NAME/ncbi_datasets_util)’s
[pages](https://$GIT_USER_NAME.github.io/ncbi_datasets_util/).
Additionally you can find package manager specific guidelines on
[conda](https://anaconda.org/$GIT_USER_NAME/ncbi_datasets_util) and
[pypi](https://pypi.org/project/ncbi_datasets_util/) respectively.

## How to use

Fill me in please! Don’t forget code examples:

### Usage

#### To download all genome data for a specific taxon

!ncbi_download -h

!ncbi_qc_summary -h

!ncbi_download_and_qc -h

``` python
1+1
```

    2

            

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