# NERDD-Link
Run a [NERDD module](https://github.com/molinfo-vienna/nerdd-module) as a
service that consumes input molecules and produces prediction tuples.
## Installation
```bash
pip install -U nerdd-link
```
## Usage
When a class inherits from ```nerdd_module.AbstractModel``` (see
[NERDD Module Github page](https://github.com/molinfo-vienna/nerdd-module)), it can be
used to create a Kafka service.
```bash
# run a Kafka service for NerddModel on localhost:9092
run_nerdd_server package.path.to.NerddModel
# modify broker url, input topic and batch size
run_nerdd_server package.path.to.NerddModel \
--broker-url my-cluster-kafka-bootstrap.kafka:9092 \
--input-topic examples \
--batch-size 10
# more information via --help
run_nerdd_server --help
```
If the model class is called ```ExamplePredictionModel```, the server will read input
tuples from the input topic ```example-prediction-inputs``` in batches of size 100
and write results to the ```results``` topic. The batch size specifies the number
of input tuples that are given to the model at once.
## Communication
Raw data
{
"_id": null,
"home_page": null,
"name": "nerdd-link",
"maintainer": null,
"docs_url": null,
"requires_python": null,
"maintainer_email": "Steffen Hirte <steffen.hirte@univie.ac.at>",
"keywords": "science, research, development, nerdd",
"author": null,
"author_email": "Steffen Hirte <steffen.hirte@univie.ac.at>",
"download_url": "https://files.pythonhosted.org/packages/10/42/3c0e304d3bd00065daff4c677a457a4798cc7801c2cc38de205b221c112c/nerdd_link-0.5.3.tar.gz",
"platform": null,
"description": "# NERDD-Link\n\nRun a [NERDD module](https://github.com/molinfo-vienna/nerdd-module) as a \nservice that consumes input molecules and produces prediction tuples.\n\n\n## Installation\n\n```bash\npip install -U nerdd-link\n```\n \n## Usage\n\nWhen a class inherits from ```nerdd_module.AbstractModel``` (see \n[NERDD Module Github page](https://github.com/molinfo-vienna/nerdd-module)), it can be \nused to create a Kafka service. \n\n```bash \n# run a Kafka service for NerddModel on localhost:9092\nrun_nerdd_server package.path.to.NerddModel\n\n# modify broker url, input topic and batch size\nrun_nerdd_server package.path.to.NerddModel \\\n --broker-url my-cluster-kafka-bootstrap.kafka:9092 \\\n --input-topic examples \\\n --batch-size 10\n\n# more information via --help\nrun_nerdd_server --help\n```\n\nIf the model class is called ```ExamplePredictionModel```, the server will read input \ntuples from the input topic ```example-prediction-inputs``` in batches of size 100\nand write results to the ```results``` topic. The batch size specifies the number\nof input tuples that are given to the model at once.\n\n## Communication\n\n",
"bugtrack_url": null,
"license": null,
"summary": "Run a NERDD module as a service",
"version": "0.5.3",
"project_urls": {
"Repository": "https://github.com/molinfo-vienna/nerdd-link"
},
"split_keywords": [
"science",
" research",
" development",
" nerdd"
],
"urls": [
{
"comment_text": null,
"digests": {
"blake2b_256": "0b157233b17953ad8e7811bae925d2d6b59a956701a5130902c042437ecac72a",
"md5": "af79b343e11d5a0632cbd905bc31c72a",
"sha256": "0438ea104facf6833a88476490591f8f626187d9c26a599893d16b30d2f01ff2"
},
"downloads": -1,
"filename": "nerdd_link-0.5.3-py3-none-any.whl",
"has_sig": false,
"md5_digest": "af79b343e11d5a0632cbd905bc31c72a",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": null,
"size": 39298,
"upload_time": "2025-09-08T23:45:21",
"upload_time_iso_8601": "2025-09-08T23:45:21.882238Z",
"url": "https://files.pythonhosted.org/packages/0b/15/7233b17953ad8e7811bae925d2d6b59a956701a5130902c042437ecac72a/nerdd_link-0.5.3-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": null,
"digests": {
"blake2b_256": "10423c0e304d3bd00065daff4c677a457a4798cc7801c2cc38de205b221c112c",
"md5": "cce84fe33042aa3049a94a5f40ae11bf",
"sha256": "8e2c4f85ee372d25f83063b87fa116c0d5e9ace8ab391a184f8849f63575e03a"
},
"downloads": -1,
"filename": "nerdd_link-0.5.3.tar.gz",
"has_sig": false,
"md5_digest": "cce84fe33042aa3049a94a5f40ae11bf",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 26933,
"upload_time": "2025-09-08T23:45:23",
"upload_time_iso_8601": "2025-09-08T23:45:23.530129Z",
"url": "https://files.pythonhosted.org/packages/10/42/3c0e304d3bd00065daff4c677a457a4798cc7801c2cc38de205b221c112c/nerdd_link-0.5.3.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2025-09-08 23:45:23",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "molinfo-vienna",
"github_project": "nerdd-link",
"travis_ci": false,
"coveralls": false,
"github_actions": true,
"lcname": "nerdd-link"
}
JSON
