# NERDD-Link
Run a [NERDD module](https://github.com/molinfo-vienna/nerdd-module) as a
service that consumes input molecules and produces prediction tuples.
## Installation
```bash
pip install -U nerdd-link
```
## Usage
When a class inherits from ```nerdd_module.AbstractModel``` (see
[NERDD Module Github page](https://github.com/molinfo-vienna/nerdd-module)), it can be
used to create a Kafka service.
```bash
# run a Kafka service for NerddModel on localhost:9092
run_nerdd_server package.path.to.NerddModel
# modify broker url, input topic and batch size
run_nerdd_server package.path.to.NerddModel \
--broker-url my-cluster-kafka-bootstrap.kafka:9092 \
--input-topic examples \
--batch-size 10
# more information via --help
run_nerdd_server --help
```
If the model class is called ```ExamplePredictionModel```, the server will read input
tuples from the input topic ```example-prediction-inputs``` in batches of size 100
and write results to the ```results``` topic. The batch size specifies the number
of input tuples that are given to the model at once.
## Communication
Raw data
{
"_id": null,
"home_page": null,
"name": "nerdd-link",
"maintainer": null,
"docs_url": null,
"requires_python": null,
"maintainer_email": "Steffen Hirte <steffen.hirte@univie.ac.at>",
"keywords": "science, research, development, nerdd",
"author": null,
"author_email": "Steffen Hirte <steffen.hirte@univie.ac.at>",
"download_url": "https://files.pythonhosted.org/packages/9e/25/c59d623d5f2f59bf48b16d2490f73eb7876589ad2210966210e0f4c1ade3/nerdd_link-0.5.14.tar.gz",
"platform": null,
"description": "# NERDD-Link\n\nRun a [NERDD module](https://github.com/molinfo-vienna/nerdd-module) as a \nservice that consumes input molecules and produces prediction tuples.\n\n\n## Installation\n\n```bash\npip install -U nerdd-link\n```\n \n## Usage\n\nWhen a class inherits from ```nerdd_module.AbstractModel``` (see \n[NERDD Module Github page](https://github.com/molinfo-vienna/nerdd-module)), it can be \nused to create a Kafka service. \n\n```bash \n# run a Kafka service for NerddModel on localhost:9092\nrun_nerdd_server package.path.to.NerddModel\n\n# modify broker url, input topic and batch size\nrun_nerdd_server package.path.to.NerddModel \\\n --broker-url my-cluster-kafka-bootstrap.kafka:9092 \\\n --input-topic examples \\\n --batch-size 10\n\n# more information via --help\nrun_nerdd_server --help\n```\n\nIf the model class is called ```ExamplePredictionModel```, the server will read input \ntuples from the input topic ```example-prediction-inputs``` in batches of size 100\nand write results to the ```results``` topic. The batch size specifies the number\nof input tuples that are given to the model at once.\n\n## Communication\n\n",
"bugtrack_url": null,
"license": null,
"summary": "Run a NERDD module as a service",
"version": "0.5.14",
"project_urls": {
"Repository": "https://github.com/molinfo-vienna/nerdd-link"
},
"split_keywords": [
"science",
" research",
" development",
" nerdd"
],
"urls": [
{
"comment_text": null,
"digests": {
"blake2b_256": "348937d76b22f06afe43067f49f77c86dee0b691ed7445e202c63c06bce01da8",
"md5": "fd44d6e27f448fde9f4d416a4cc3cae9",
"sha256": "2ec0a3ba7939d1b4cee4dc6b10013af2681cd94dab62b0d535d63ee0772092e3"
},
"downloads": -1,
"filename": "nerdd_link-0.5.14-py3-none-any.whl",
"has_sig": false,
"md5_digest": "fd44d6e27f448fde9f4d416a4cc3cae9",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": null,
"size": 43825,
"upload_time": "2025-10-23T02:21:17",
"upload_time_iso_8601": "2025-10-23T02:21:17.533259Z",
"url": "https://files.pythonhosted.org/packages/34/89/37d76b22f06afe43067f49f77c86dee0b691ed7445e202c63c06bce01da8/nerdd_link-0.5.14-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": null,
"digests": {
"blake2b_256": "9e25c59d623d5f2f59bf48b16d2490f73eb7876589ad2210966210e0f4c1ade3",
"md5": "ee8077044d7d00f822cff7ea66524097",
"sha256": "1b4173b8f4f0f772659dd6817068afb8749d004572ff8fa17cacf07f42707e0a"
},
"downloads": -1,
"filename": "nerdd_link-0.5.14.tar.gz",
"has_sig": false,
"md5_digest": "ee8077044d7d00f822cff7ea66524097",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 29886,
"upload_time": "2025-10-23T02:21:19",
"upload_time_iso_8601": "2025-10-23T02:21:19.367298Z",
"url": "https://files.pythonhosted.org/packages/9e/25/c59d623d5f2f59bf48b16d2490f73eb7876589ad2210966210e0f4c1ade3/nerdd_link-0.5.14.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2025-10-23 02:21:19",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "molinfo-vienna",
"github_project": "nerdd-link",
"travis_ci": false,
"coveralls": false,
"github_actions": true,
"lcname": "nerdd-link"
}
JSON
