| Name | nettensorpat JSON |
| Version |
2024.7.13
JSON |
| download |
| home_page | None |
| Summary | NetworkTensorPattern is a Python package for finding patterns in tensors. |
| upload_time | 2024-07-13 21:59:05 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.7 |
| license | None |
| keywords |
networktensorpattern
netpat
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
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| coveralls test coverage |
No coveralls.
|
# 🧬 Network Tensor Pattern
A python package implementation to the C codebase of the paper [A Local Tensor Clustering Algorithm to Annotate Uncharacterized Genes with Many Biological Networks](https://publications.waset.org/abstracts/155115/a-local-tensor-clustering-algorithm-to-annotate-uncharacterized-genes-with-many-biological-networks) with the addition of a second method of Global Tensor Clustering.
---
# 🔔 Requirements
⚙️ OS Supported:
| Windows | 🟢 |
| --- | --- |
| Linux | 🟢 |
| MacOS | 🟢 |
⚠️ Requires Python ≤ 3.11 due to setuptools being deprecated after 3.12
- Consider installing a python environment manager i.e. Anaconda/Miniconda to install Python ≤ 3.11
⚠️ GCC is required in order to compile the C source files and headers into a C Python Extension.
💻 Windows Only:
- Consider [installing MingW via Sourceforge](https://sourceforge.net/projects/mingw/files/Installer/mingw-get-setup.exe/download) (as its website is down as of March 2021)
---
# 🏃 Package Compilation
To compile the C headers and source code:
```bash
python setup.py pnt --compile
```
This should generate a file with our C Python Extensions called `Tensor_Python.so` under `./src/patnetstensor`
To install the python package:
```bash
pip3 install .
```
---
Raw data
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