| Name | neuron-process-utils JSON |
| Version |
2025.9.9
JSON |
| download |
| home_page | None |
| Summary | neuron process utils |
| upload_time | 2025-09-12 01:35:33 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.10 |
| license | None |
| keywords |
neuron
process
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# 神经元数据处理工具
注：需要图像和swc文件同名，例如(1.tif, 1.swc)
```shell
# 处理swc，将parent指向节点不存在于swc文件中的值置为-1，对swc进行reindex
# 保存到原目录
npu_swc_process -i ./CWMBS/swc
# 保存到新目录
npu_swc_process -i ./CWMBS/swc -o ./CWMBS/process_swc
# swc转mask，根据xyz和r，将xyz点r范围内的像素设为255
npu_swc_to_mask -i ./CWMBS/img -s ./CWMBS/process_swc -o ./CWMBS/process_mask
# 重设半径
npu_swc_to_mask -i ./CWMBS/img -s ./CWMBS/process_swc -o ./CWMBS/process_mask -r 1
# swc转dist(需要swc转为mask时的r为1)，以0-1 float32存储
npu_swc_to_dist -m ./CWMBS/img -s ./CWMBS/process_swc -o ./CWMBS/process_dist
# 设置邻域范围
npu_swc_to_dist -m ./CWMBS/img -s ./CWMBS/process_swc -o ./CWMBS/process_dist --lns 10
# 以0-255 uint8存储
npu_swc_to_dist -m ./CWMBS/img -s ./CWMBS/process_swc -o ./CWMBS/process_dist --s
# mask转dist(需要swc转为mask时的r为1)，以0-1 float32存储
npu_mask_to_dist -m ./CWMBS/process_mask -o ./CWMBS/process_dist
# 设置邻域范围
npu_mask_to_dist -m ./CWMBS/process_mask -o ./CWMBS/process_dist --lns 10
# 以0-255 uint8存储
npu_mask_to_dist -m ./CWMBS/process_mask -o ./CWMBS/process_dist --s
```
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