# NeuroStrip
[](https://github.com/dyollb/neurostrip/actions/workflows/ci.yml)
[](LICENSE)
[](https://pypi.org/project/neurostrip/)
<img src="https://img.shields.io/pypi/dm/neurostrip.svg?label=pypi%20downloads&logo=python&logoColor=green"/>
<img src="https://img.shields.io/badge/python-3.9%20|3.10%20|%203.11%20|%203.12-3776ab.svg"/>
CNN based skull stripping (brain masking) from MRI.
<p align="center">
<img src="https://raw.githubusercontent.com/dyollb/neurostrip/main/slicer_plugin/Resources/Icons/NeuroStrip.png" alt="NeuroStrip Slicer Plugin Icon" width="120"/>
</p>
## Installation
For CPU support:
```bash
pip install neurostrip[cpu]
```
For GPU support:
```bash
pip install neurostrip[gpu]
```
## Usage
```bash
neurostrip --image-path input.nii.gz --mask-path mask.nii.gz --masked-image-path output.nii.gz
```
## Slicer Plugin
To make it more convenient to use, this repository includes a plugin that can be installed in [3D Slicer](https://www.slicer.org/). For installation instructions and more details, please refer to the [README](https://raw.githubusercontent.com/dyollb/neurostrip/main/slicer_plugin/README.md).
## Contributing
Contributions are welcome! See [CONTRIBUTING.md](CONTRIBUTING.md) for development setup and guidelines.
## License
MIT License - see LICENSE file for details.
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