omniplate

Name	omniplate JSON
Version	3.0.21 JSON
	download
home_page	https://swainlab.bio.ed.ac.uk/software/omniplate
Summary	For analysing and meta-analysing plate-reader data
upload_time	2025-10-06 16:26:44
maintainer	None
docs_url	None
author	Peter Swain
requires_python	<3.12,>=3.11
license	MIT
keywords	omniplate systems biology bioinformatics plate readers
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # Omniplate
A Python package for analysing data from plate-reader studies of growing biological cells. Users can correct for autofluorescence, determine growth rates and the amount of fluorescence per cell, and simultaneously analyse multiple experiments.

## Documentation
A tutorial is [available](https://swainlab.bio.ed.ac.uk/software/omniplate/).

## Development history
+ `v3.0`: Consistent use of snake_case, but breaking backwards compatibility
+ `v3.0.2`: Only for python 3.11. Nunchaku updated.

## Citation
If you find the software useful, please consider citing:

Montaño-Gutierrez, L. F., Moreno, N. M., Farquhar, I. L., Huo, Y., Bandiera, L., & Swain, P. S. (2022). Analysing and meta-analysing time-series data of microbial growth and gene expression from plate readers. PLOS Computational Biology, 18(5), e1010138.

            

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