|PyPI|
ontobio - a python API for working with ontologies and associations
===================================================================
This module provides objects and utility methods for working with
ontologies and associations of entities (genes, variants, etc) to
ontology classes.
The ontologies and associations can either be local files or provided by
remote services (currently the OntoBee SPARQL service for ontologies and
a Monarch or GO Golr service for associations).
Documentation
=============
Documentation is on `readthedocs <https://ontobio.readthedocs.io>`__
Notebooks
=========
See the `Jupyter
Notebooks <http://nbviewer.jupyter.org/github/biolink/ontobio/tree/master/notebooks/>`__
for code examples
Mailing list
============
- `biolink-api google
group <https://groups.google.com/forum/#!forum/biolink-api>`__
.. |PyPI| image:: https://img.shields.io/pypi/v/ontobio.svg
:target: https://pypi.python.org/pypi/ontobio
Raw data
{
"_id": null,
"home_page": "https://github.com/biolink/ontobio",
"name": "ontobio",
"maintainer": null,
"docs_url": null,
"requires_python": null,
"maintainer_email": null,
"keywords": "ontology graph obo owl sparql networkx network",
"author": "Chris Mungall",
"author_email": "cmungall@gmail.com",
"download_url": "https://files.pythonhosted.org/packages/f7/91/20ca42e8a4eef8add6c0288efdf6a9a2ce2c5c98eb07faaa40d9cae558cd/ontobio-2.8.24.tar.gz",
"platform": null,
"description": "|PyPI|\n\nontobio - a python API for working with ontologies and associations\n===================================================================\n\nThis module provides objects and utility methods for working with\nontologies and associations of entities (genes, variants, etc) to\nontology classes.\n\nThe ontologies and associations can either be local files or provided by\nremote services (currently the OntoBee SPARQL service for ontologies and\na Monarch or GO Golr service for associations).\n\nDocumentation\n=============\n\nDocumentation is on `readthedocs <https://ontobio.readthedocs.io>`__\n\nNotebooks\n=========\n\nSee the `Jupyter\nNotebooks <http://nbviewer.jupyter.org/github/biolink/ontobio/tree/master/notebooks/>`__\nfor code examples\n\nMailing list\n============\n\n- `biolink-api google\n group <https://groups.google.com/forum/#!forum/biolink-api>`__\n\n.. |PyPI| image:: https://img.shields.io/pypi/v/ontobio.svg\n :target: https://pypi.python.org/pypi/ontobio\n \n \n\n\n",
"bugtrack_url": null,
"license": "BSD",
"summary": "Library for working with OBO Library Ontologies and associations",
"version": "2.8.24",
"project_urls": {
"Homepage": "https://github.com/biolink/ontobio"
},
"split_keywords": [
"ontology",
"graph",
"obo",
"owl",
"sparql",
"networkx",
"network"
],
"urls": [
{
"comment_text": "",
"digests": {
"blake2b_256": "756ab82739d0e92de073f3f2c15ec4a8745e3e0b5d937dce2050bc724708f02f",
"md5": "bd2f81861d569acdf26232f3a65bfe88",
"sha256": "a29373dbafe67e96725df3d0b4d63e884b5d0a9a0075b4714eefcd1abf30e2fb"
},
"downloads": -1,
"filename": "ontobio-2.8.24-py3-none-any.whl",
"has_sig": false,
"md5_digest": "bd2f81861d569acdf26232f3a65bfe88",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": null,
"size": 315303,
"upload_time": "2024-03-29T00:33:51",
"upload_time_iso_8601": "2024-03-29T00:33:51.626283Z",
"url": "https://files.pythonhosted.org/packages/75/6a/b82739d0e92de073f3f2c15ec4a8745e3e0b5d937dce2050bc724708f02f/ontobio-2.8.24-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": "",
"digests": {
"blake2b_256": "f79120ca42e8a4eef8add6c0288efdf6a9a2ce2c5c98eb07faaa40d9cae558cd",
"md5": "0b0a21599f3e95b5b88ad3f3c9aa205c",
"sha256": "86dc7ce4ac7577995db0b30285725f97daf8c308841dd49f07d6c54bfd71e953"
},
"downloads": -1,
"filename": "ontobio-2.8.24.tar.gz",
"has_sig": false,
"md5_digest": "0b0a21599f3e95b5b88ad3f3c9aa205c",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 253796,
"upload_time": "2024-03-29T00:33:55",
"upload_time_iso_8601": "2024-03-29T00:33:55.054860Z",
"url": "https://files.pythonhosted.org/packages/f7/91/20ca42e8a4eef8add6c0288efdf6a9a2ce2c5c98eb07faaa40d9cae558cd/ontobio-2.8.24.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2024-03-29 00:33:55",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "biolink",
"github_project": "ontobio",
"travis_ci": false,
"coveralls": false,
"github_actions": true,
"requirements": [
{
"name": "rdflib",
"specs": [
[
">=",
"6.0.0"
]
]
},
{
"name": "marshmallow",
"specs": [
[
">=",
"3.0.0b11"
],
[
"<",
"4.0"
]
]
},
{
"name": "jsobject",
"specs": [
[
">=",
"0.0"
]
]
},
{
"name": "prefixcommons",
"specs": [
[
">=",
"0.1.9"
]
]
},
{
"name": "requests",
"specs": [
[
">=",
"0.0"
]
]
},
{
"name": "pip",
"specs": [
[
">=",
"9.0.1"
]
]
},
{
"name": "wheel",
"specs": [
[
">",
"0.25.0"
]
]
},
{
"name": "pysolr",
"specs": [
[
">=",
"3.6.0"
]
]
},
{
"name": "networkx",
"specs": [
[
">=",
"2.3"
]
]
},
{
"name": "matplotlib",
"specs": [
[
">=",
"2.0.0"
]
]
},
{
"name": "SPARQLWrapper",
"specs": [
[
">=",
"1.8.0"
]
]
},
{
"name": "pandas",
"specs": [
[
">=",
"0.0"
]
]
},
{
"name": "scipy",
"specs": [
[
">=",
"1.2.0"
]
]
},
{
"name": "twine",
"specs": []
},
{
"name": "jsonpickle",
"specs": [
[
">=",
"0.0"
]
]
},
{
"name": "jsonpath_rw",
"specs": [
[
">=",
"0.0"
]
]
},
{
"name": "PyShEx",
"specs": [
[
">=",
"0.7.11"
]
]
},
{
"name": "pytest",
"specs": [
[
">=",
"0.0"
]
]
},
{
"name": "pytest_logging",
"specs": [
[
">=",
"0.0"
]
]
},
{
"name": "pydotplus",
"specs": [
[
">=",
"0.0"
]
]
},
{
"name": "plotly",
"specs": [
[
">=",
"2.0.7"
]
]
},
{
"name": "pyyaml",
"specs": []
},
{
"name": "yamldown",
"specs": [
[
">=",
"0.1.7"
]
]
},
{
"name": "click",
"specs": []
},
{
"name": "diskcache",
"specs": [
[
">=",
"4.0.0"
]
]
},
{
"name": "bidict",
"specs": [
[
">=",
"0.20.0"
]
]
},
{
"name": "python-dateutil",
"specs": []
},
{
"name": "chardet",
"specs": []
},
{
"name": "dacite",
"specs": [
[
">=",
"1.6.0"
]
]
},
{
"name": "pyparsing",
"specs": [
[
"==",
"2.4.7"
]
]
}
],
"lcname": "ontobio"
}
JSON
