ontobio


Nameontobio JSON
Version 2.9.12 PyPI version JSON
download
home_pagehttps://github.com/biolink/ontobio
SummaryLibrary for working with OBO Library Ontologies and associations
upload_time2024-12-16 21:15:19
maintainerNone
docs_urlNone
authorChris Mungall
requires_pythonNone
licenseBSD
keywords ontology graph obo owl sparql networkx network
VCS
bugtrack_url
requirements rdflib marshmallow jsobject prefixcommons requests pip wheel pysolr networkx matplotlib SPARQLWrapper pandas scipy twine jsonpickle jsonpath_rw PyShEx pytest pytest_logging pydotplus plotly pyyaml yamldown click diskcache bidict python-dateutil chardet dacite pyparsing
Travis-CI No Travis.
coveralls test coverage No coveralls.
            |PyPI|

ontobio - a python API for working with ontologies and associations
===================================================================

This module provides objects and utility methods for working with
ontologies and associations of entities (genes, variants, etc) to
ontology classes.

The ontologies and associations can either be local files or provided by
remote services (currently the OntoBee SPARQL service for ontologies and
a Monarch or GO Golr service for associations).

Documentation
=============

Documentation is on `readthedocs <https://ontobio.readthedocs.io>`__

Notebooks
=========

See the `Jupyter
Notebooks <http://nbviewer.jupyter.org/github/biolink/ontobio/tree/master/notebooks/>`__
for code examples

Mailing list
============

-  `biolink-api google
   group <https://groups.google.com/forum/#!forum/biolink-api>`__

.. |PyPI| image:: https://img.shields.io/pypi/v/ontobio.svg
   :target: https://pypi.python.org/pypi/ontobio
   
   



            

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