openslide-python


Nameopenslide-python JSON
Version 1.4.1 PyPI version JSON
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home_pageNone
SummaryPython interface to OpenSlide
upload_time2024-10-30 20:19:19
maintainerNone
docs_urlNone
authorNone
requires_python>=3.8
licenseGNU Lesser General Public License, version 2.1
keywords openslide whole-slide image virtual slide library
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            # OpenSlide Python

OpenSlide Python is a Python interface to the OpenSlide library.

[OpenSlide] is a C library that provides a simple interface for reading
whole-slide images, also known as virtual slides, which are high-resolution
images used in digital pathology.  These images can occupy tens of gigabytes
when uncompressed, and so cannot be easily read using standard tools or
libraries, which are designed for images that can be comfortably
uncompressed into RAM.  Whole-slide images are typically multi-resolution;
OpenSlide allows reading a small amount of image data at the resolution
closest to a desired zoom level.

OpenSlide can read virtual slides in several formats:

* [Aperio][] (`.svs`, `.tif`)
* [DICOM][] (`.dcm`)
* [Hamamatsu][] (`.ndpi`, `.vms`, `.vmu`)
* [Leica][] (`.scn`)
* [MIRAX][] (`.mrxs`)
* [Philips][] (`.tiff`)
* [Sakura][] (`.svslide`)
* [Trestle][] (`.tif`)
* [Ventana][] (`.bif`, `.tif`)
* [Zeiss][] (`.czi`)
* [Generic tiled TIFF][] (`.tif`)

[OpenSlide]: https://openslide.org/
[Aperio]: https://openslide.org/formats/aperio/
[DICOM]: https://openslide.org/formats/dicom/
[Hamamatsu]: https://openslide.org/formats/hamamatsu/
[Leica]: https://openslide.org/formats/leica/
[MIRAX]: https://openslide.org/formats/mirax/
[Philips]: https://openslide.org/formats/philips/
[Sakura]: https://openslide.org/formats/sakura/
[Trestle]: https://openslide.org/formats/trestle/
[Ventana]: https://openslide.org/formats/ventana/
[Zeiss]: https://openslide.org/formats/zeiss/
[Generic tiled TIFF]: https://openslide.org/formats/generic-tiff/


## Requirements

* Python ≥ 3.8
* OpenSlide ≥ 3.4.0
* Pillow


## Installation

OpenSlide Python requires [OpenSlide].  Install both components from PyPI
with:

```console
pip install openslide-python openslide-bin
```

Or, see the [OpenSlide Python documentation][installing] for instructions on
installing so OpenSlide Python can find OpenSlide.

[installing]: https://openslide.org/api/python/#installing


## More Information

- [API documentation](https://openslide.org/api/python/)
- [Changelog](https://github.com/openslide/openslide-python/blob/main/CHANGELOG.md#notable-changes-in-openslide-python)
- [Website][OpenSlide]
- [GitHub](https://github.com/openslide/openslide-python)
- [Sample data](https://openslide.cs.cmu.edu/download/openslide-testdata/)


## License

OpenSlide Python is released under the terms of the [GNU Lesser General
Public License, version 2.1](https://openslide.org/license/).

OpenSlide Python is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
License for more details.

            

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    "description": "# OpenSlide Python\n\nOpenSlide Python is a Python interface to the OpenSlide library.\n\n[OpenSlide] is a C library that provides a simple interface for reading\nwhole-slide images, also known as virtual slides, which are high-resolution\nimages used in digital pathology.  These images can occupy tens of gigabytes\nwhen uncompressed, and so cannot be easily read using standard tools or\nlibraries, which are designed for images that can be comfortably\nuncompressed into RAM.  Whole-slide images are typically multi-resolution;\nOpenSlide allows reading a small amount of image data at the resolution\nclosest to a desired zoom level.\n\nOpenSlide can read virtual slides in several formats:\n\n* [Aperio][] (`.svs`, `.tif`)\n* [DICOM][] (`.dcm`)\n* [Hamamatsu][] (`.ndpi`, `.vms`, `.vmu`)\n* [Leica][] (`.scn`)\n* [MIRAX][] (`.mrxs`)\n* [Philips][] (`.tiff`)\n* [Sakura][] (`.svslide`)\n* [Trestle][] (`.tif`)\n* [Ventana][] (`.bif`, `.tif`)\n* [Zeiss][] (`.czi`)\n* [Generic tiled TIFF][] (`.tif`)\n\n[OpenSlide]: https://openslide.org/\n[Aperio]: https://openslide.org/formats/aperio/\n[DICOM]: https://openslide.org/formats/dicom/\n[Hamamatsu]: https://openslide.org/formats/hamamatsu/\n[Leica]: https://openslide.org/formats/leica/\n[MIRAX]: https://openslide.org/formats/mirax/\n[Philips]: https://openslide.org/formats/philips/\n[Sakura]: https://openslide.org/formats/sakura/\n[Trestle]: https://openslide.org/formats/trestle/\n[Ventana]: https://openslide.org/formats/ventana/\n[Zeiss]: https://openslide.org/formats/zeiss/\n[Generic tiled TIFF]: https://openslide.org/formats/generic-tiff/\n\n\n## Requirements\n\n* Python \u2265 3.8\n* OpenSlide \u2265 3.4.0\n* Pillow\n\n\n## Installation\n\nOpenSlide Python requires [OpenSlide].  Install both components from PyPI\nwith:\n\n```console\npip install openslide-python openslide-bin\n```\n\nOr, see the [OpenSlide Python documentation][installing] for instructions on\ninstalling so OpenSlide Python can find OpenSlide.\n\n[installing]: https://openslide.org/api/python/#installing\n\n\n## More Information\n\n- [API documentation](https://openslide.org/api/python/)\n- [Changelog](https://github.com/openslide/openslide-python/blob/main/CHANGELOG.md#notable-changes-in-openslide-python)\n- [Website][OpenSlide]\n- [GitHub](https://github.com/openslide/openslide-python)\n- [Sample data](https://openslide.cs.cmu.edu/download/openslide-testdata/)\n\n\n## License\n\nOpenSlide Python is released under the terms of the [GNU Lesser General\nPublic License, version 2.1](https://openslide.org/license/).\n\nOpenSlide Python is distributed in the hope that it will be useful, but\nWITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY\nor FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public\nLicense for more details.\n",
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