| Name | pbs-builder JSON |
| Version |
0.4.8
JSON |
| download |
| home_page | None |
| Summary | The workflow management system for scalable data analyses. |
| upload_time | 2024-05-08 07:35:55 |
| maintainer | None |
| docs_url | None |
| author | Jinyang Zhang |
| requires_python | <4.0,>=3.7 |
| license | LICENSE |
| keywords |
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
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| coveralls test coverage |
No coveralls.
|
# PBS-builder
A simplified version of workflow management system for scalable data analysis.
# Change log
- Version 0.4.7: consistent behaviour in mu02 and mu04
- Version 0.4.6: add suport for escape character in variable names
- Version 0.4.5: add progress bar and verbose output options
- Version 0.4.4: add elapsed time for each job
- Version 0.4.3: add support for non-BIOLS machines
- Version 0.4.2: integrate `pushover` service
- Version 0.4.1: auto-switch to corresponding pbs_server for qbatch
- Version 0.4.0: merge qcancel into qbatch commands, change API
- Version 0.3.1: add allocated/total gpus in `pestat` output
- Version 0.3.0: include `pestat` in package data
- Version 0.2.0: move `sample_sheet` from header to job section, add `group_sheet` support.
- Version 0.1.0: first functional version.
# Usage
`pbs-builder` include the following commands:
1. [`qbatch`](https://bioinfo.biols.ac.cn/git/zhangjy/pbs-builder/wiki/01.qbatch+-+building+automated+and+reproducible+pipelines)for batch submission of TORQUE/SLURM jobs
2. [`pestat`](https://bioinfo.biols.ac.cn/git/zhangjy/pbs-builder/wiki/02.pestat+-+monitor+node+status) for monitoring cluster & nodes status
3. [`pushover`](https://bioinfo.biols.ac.cn/git/zhangjy/pbs-builder/wiki/03.pushover+-+get+nofications+from+compute+nodes+using+Pushover+service) for get noficiations from compute nodes
Please refer to our [wiki](https://bioinfo.biols.ac.cn/git/zhangjy/pbs-builder/wiki/_pages) for detailed instructions.
# Installation
pbs-builder runs in **python3.7+** with the `tomli` package installed, no other dependencies are required.
Install pbs-builder using the following command:
```bash
pip install pbs-builder
```
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