phippery

Name	phippery JSON
Version	1.3.1 JSON
	download
home_page	None
Summary	Tools for analyzing PhIP-Seq Data.
upload_time	2024-11-07 16:24:21
maintainer	None
docs_url	None
author	None
requires_python	>=3.7
license	None
keywords	phippery phipseq phage modeling phip
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # Phippery

<p>
  <img src="data/cartoons/Xarray_function.png" width="250">
</p>

[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
[![Docker Repository on Quay](https://quay.io/repository/hdc-workflows/phippery/status "Docker Repository on Quay")](https://quay.io/repository/hdc-workflows/phippery)
[![build and test](https://github.com/matsengrp/phippery/workflows/build%20and%20test/badge.svg)](https://github.com/matsengrp/phippery/blob/master/.github/workflows/build-and-test.yaml)

A set of functions designed to query an 
[xarray DataSet](http://xarray.pydata.org/en/stable/user-guide/data-structures.html#dataset) 
object formatted to tie enrichment data with 
their respective row & column (peptide & sample) annotations. 

Please see the 
[documentation](https://matsengrp.github.io/phippery/) 
for further details.

## Developer Install

```
# using venv
python -m venv phippery_dev_env
source phippery_dev_env/bin/activate

# install
git clone https://github.com/matsengrp/phippery.git
(cd phippery && pip install -e ".[dev]")
```


            

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    "description": "# Phippery\n\n<p>\n  <img src=\"data/cartoons/Xarray_function.png\" width=\"250\">\n</p>\n\n[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)\n[![Docker Repository on Quay](https://quay.io/repository/hdc-workflows/phippery/status \"Docker Repository on Quay\")](https://quay.io/repository/hdc-workflows/phippery)\n[![build and test](https://github.com/matsengrp/phippery/workflows/build%20and%20test/badge.svg)](https://github.com/matsengrp/phippery/blob/master/.github/workflows/build-and-test.yaml)\n\nA set of functions designed to query an \n[xarray DataSet](http://xarray.pydata.org/en/stable/user-guide/data-structures.html#dataset) \nobject formatted to tie enrichment data with \ntheir respective row & column (peptide & sample) annotations. \n\nPlease see the \n[documentation](https://matsengrp.github.io/phippery/) \nfor further details.\n\n## Developer Install\n\n```\n# using venv\npython -m venv phippery_dev_env\nsource phippery_dev_env/bin/activate\n\n# install\ngit clone https://github.com/matsengrp/phippery.git\n(cd phippery && pip install -e \".[dev]\")\n```\n\n",
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