Name | picea JSON |
Version |
0.0.31
JSON |
| download |
home_page | https://github.com/holmrenser/picea |
Summary | A lightweight python library for working with trees and biological sequence collections |
upload_time | 2024-06-05 09:39:51 |
maintainer | None |
docs_url | None |
author | Rens Holmer |
requires_python | <3.13,>=3.10 |
license | MIT |
keywords |
|
VCS |
 |
bugtrack_url |
|
requirements |
No requirements were recorded.
|
Travis-CI |
No Travis.
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coveralls test coverage |
No coveralls.
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# _picea_
Sprucing up bioinformatics analysis
[](https://github.com/holmrenser/picea/actions/workflows/ci.yml)

[](https://coveralls.io/github/holmrenser/picea?branch=master)
[](https://badge.fury.io/py/picea)
[](https://pypi.python.org/pypi/ansicolortags/)
[](https://pypi.python.org/pypi/ansicolortags/)

```
pip install picea
```
_picea_ has datastructures and methods to perform common bioinformatics tasks. Currently sequences, sequence annotations, trees, and ontologies are supported.
Example:
```python
from picea import Tree, treeplot
import matplotlib.pyplot as plt
newick = '(((a,b),(c,d)),e)'
tree = Tree.from_newick(newick)
fig, (ax1, ax2) = plt.subplots(ncols = 2, figsize = (10, 4))
#left-to-right layout with direct links
treeplot(tree, style='rectangular', ltr=True, ax=ax1)
#right-to-left layout with square links
treeplot(tree, style='square', ltr=False, ax=ax2)
```
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