| Name | picea JSON |
| Version |
0.0.14
JSON |
| download |
| home_page | https://github.com/holmrenser/picea |
| Summary | A lightweight python library for working with trees and biological sequence collections |
| upload_time | 2020-07-10 14:12:06 |
| maintainer | |
| docs_url | None |
| author | Rens Holmer |
| requires_python | |
| license | MIT |
| keywords |
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
_picea_
=======
Lightweight python library for working with trees and sequence collections
[](https://coveralls.io/github/holmrenser/picea?branch=master)
[](https://badge.fury.io/py/picea)
[](https://pypi.python.org/pypi/ansicolortags/)
[](https://pypi.python.org/pypi/ansicolortags/)
```
pip install picea
```
The above figure can be generated with the following code
```python
from picea import Tree
import matplotlib.pyplot as plt
newick = '(((a,b),(c,d)),e)'
tree = Tree.from_newick(newick)
fig, (ax1, ax2) = plt.subplots(ncols = 2, figsize = (10, 4))
#left-to-right layout with direct links
tree.layout(ltr = True)
for node1, node2 in tree.links:
ax1.plot(
(node1.x, node2.x),
(node1.y, node2.y),
c = 'k'
)
for leaf in tree.leaves:
ax1.text(
leaf.x + .1,
leaf.y - .1,
leaf.name,
fontsize = 18
)
#right-to-left layout with square links
tree.layout(ltr = False)
for node1, node2 in tree.links:
ax2.plot(
(node1.x, node1.x),
(node1.y, node2.y)
)
ax2.plot(
(node1.x, node2.x),
(node2.y, node2.y)
)
#clean up plots
ax1.set_xlim((-.5, 3.5))
ax2.set_xlim((-3.5, .5))
for ax in (ax1,ax2):
ax.set_xticks([],[])
ax.set_yticks([],[])
```
Raw data
{
"_id": null,
"home_page": "https://github.com/holmrenser/picea",
"name": "picea",
"maintainer": "",
"docs_url": null,
"requires_python": "",
"maintainer_email": "",
"keywords": "",
"author": "Rens Holmer",
"author_email": "rens.holmer@wur.nl",
"download_url": "https://files.pythonhosted.org/packages/42/e2/9a2932b10b94428fa084e61961736d329a4b614ab23203faf06fe5abaad9/picea-0.0.14.tar.gz",
"platform": "Windows",
"description": "_picea_\n=======\n\nLightweight python library for working with trees and sequence collections\n\n\n\n[](https://coveralls.io/github/holmrenser/picea?branch=master)\n[](https://badge.fury.io/py/picea)\n[](https://pypi.python.org/pypi/ansicolortags/)\n[](https://pypi.python.org/pypi/ansicolortags/)\n\n\n\n```\npip install picea\n```\n\n\n\nThe above figure can be generated with the following code\n\n```python\nfrom picea import Tree\nimport matplotlib.pyplot as plt\n\nnewick = '(((a,b),(c,d)),e)'\ntree = Tree.from_newick(newick)\n\nfig, (ax1, ax2) = plt.subplots(ncols = 2, figsize = (10, 4))\n\n#left-to-right layout with direct links\ntree.layout(ltr = True)\nfor node1, node2 in tree.links:\n ax1.plot(\n (node1.x, node2.x),\n (node1.y, node2.y),\n c = 'k'\n )\nfor leaf in tree.leaves:\n ax1.text(\n leaf.x + .1, \n leaf.y - .1, \n leaf.name,\n fontsize = 18\n )\n\n#right-to-left layout with square links\ntree.layout(ltr = False)\nfor node1, node2 in tree.links:\n ax2.plot(\n (node1.x, node1.x),\n (node1.y, node2.y)\n )\n ax2.plot(\n (node1.x, node2.x),\n (node2.y, node2.y)\n )\n\n#clean up plots\nax1.set_xlim((-.5, 3.5))\nax2.set_xlim((-3.5, .5))\nfor ax in (ax1,ax2):\n ax.set_xticks([],[])\n ax.set_yticks([],[])\n```\n\n",
"bugtrack_url": null,
"license": "MIT",
"summary": "A lightweight python library for working with trees and biological sequence collections",
"version": "0.0.14",
"split_keywords": [],
"urls": [
{
"comment_text": "",
"digests": {
"md5": "51f8a2f374ebb46b3792b85ad8f790a4",
"sha256": "a8a84b4b66dc88f31fc0c81d5bb2597d47acc8cff50e21983fd4a53d46c365be"
},
"downloads": -1,
"filename": "picea-0.0.14-py3-none-any.whl",
"has_sig": false,
"md5_digest": "51f8a2f374ebb46b3792b85ad8f790a4",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": null,
"size": 13532,
"upload_time": "2020-07-10T14:12:03",
"upload_time_iso_8601": "2020-07-10T14:12:03.765111Z",
"url": "https://files.pythonhosted.org/packages/f3/79/9205c7e4fc86fd866fd0e279d73c64310cb89e9d3667656a1f7e666194ed/picea-0.0.14-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": "",
"digests": {
"md5": "617803e20a5d5fbdca779a96e1f60003",
"sha256": "18445ca9463307f4d208d2da24f69c5449483a9c406790f6fb061203622c27b6"
},
"downloads": -1,
"filename": "picea-0.0.14.tar.gz",
"has_sig": false,
"md5_digest": "617803e20a5d5fbdca779a96e1f60003",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 245822,
"upload_time": "2020-07-10T14:12:06",
"upload_time_iso_8601": "2020-07-10T14:12:06.125490Z",
"url": "https://files.pythonhosted.org/packages/42/e2/9a2932b10b94428fa084e61961736d329a4b614ab23203faf06fe5abaad9/picea-0.0.14.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2020-07-10 14:12:06",
"github": true,
"gitlab": false,
"bitbucket": false,
"github_user": null,
"github_project": "holmrenser",
"error": "Could not fetch GitHub repository",
"lcname": "picea"
}
