picea


Namepicea JSON
Version 0.0.31 PyPI version JSON
download
home_pagehttps://github.com/holmrenser/picea
SummaryA lightweight python library for working with trees and biological sequence collections
upload_time2024-06-05 09:39:51
maintainerNone
docs_urlNone
authorRens Holmer
requires_python<3.13,>=3.10
licenseMIT
keywords
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            # _picea_

Sprucing up bioinformatics analysis

[![CI](https://github.com/holmrenser/picea/actions/workflows/ci.yml/badge.svg)](https://github.com/holmrenser/picea/actions/workflows/ci.yml)
![docs](https://github.com/holmrenser/picea/workflows/docs/badge.svg?branch=master)
[![Coverage Status](https://coveralls.io/repos/github/holmrenser/picea/badge.svg?branch=master)](https://coveralls.io/github/holmrenser/picea?branch=master)

[![PyPI version](https://badge.fury.io/py/picea.svg)](https://badge.fury.io/py/picea)
[![PyPI pyversions](https://img.shields.io/pypi/pyversions/picea.svg)](https://pypi.python.org/pypi/ansicolortags/)
[![PyPI status](https://img.shields.io/pypi/status/picea.svg)](https://pypi.python.org/pypi/ansicolortags/)

![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)

```
pip install picea
```

_picea_ has datastructures and methods to perform common bioinformatics tasks. Currently sequences, sequence annotations, trees, and ontologies are supported.

Example:

```python
from picea import Tree, treeplot
import matplotlib.pyplot as plt

newick = '(((a,b),(c,d)),e)'
tree = Tree.from_newick(newick)

fig, (ax1, ax2) = plt.subplots(ncols = 2, figsize = (10, 4))

#left-to-right layout with direct links
treeplot(tree, style='rectangular', ltr=True, ax=ax1)

#right-to-left layout with square links
treeplot(tree, style='square', ltr=False, ax=ax2)
```

            

Raw data

            {
    "_id": null,
    "home_page": "https://github.com/holmrenser/picea",
    "name": "picea",
    "maintainer": null,
    "docs_url": null,
    "requires_python": "<3.13,>=3.10",
    "maintainer_email": null,
    "keywords": null,
    "author": "Rens Holmer",
    "author_email": null,
    "download_url": "https://files.pythonhosted.org/packages/23/53/373ba796f49469d69e6d8e90815ebe2c883eae8b61bedbbf5b0b96c25a2a/picea-0.0.31.tar.gz",
    "platform": null,
    "description": "# _picea_\n\nSprucing up bioinformatics analysis\n\n[![CI](https://github.com/holmrenser/picea/actions/workflows/ci.yml/badge.svg)](https://github.com/holmrenser/picea/actions/workflows/ci.yml)\n![docs](https://github.com/holmrenser/picea/workflows/docs/badge.svg?branch=master)\n[![Coverage Status](https://coveralls.io/repos/github/holmrenser/picea/badge.svg?branch=master)](https://coveralls.io/github/holmrenser/picea?branch=master)\n\n[![PyPI version](https://badge.fury.io/py/picea.svg)](https://badge.fury.io/py/picea)\n[![PyPI pyversions](https://img.shields.io/pypi/pyversions/picea.svg)](https://pypi.python.org/pypi/ansicolortags/)\n[![PyPI status](https://img.shields.io/pypi/status/picea.svg)](https://pypi.python.org/pypi/ansicolortags/)\n\n![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)\n\n```\npip install picea\n```\n\n_picea_ has datastructures and methods to perform common bioinformatics tasks. Currently sequences, sequence annotations, trees, and ontologies are supported.\n\nExample:\n\n```python\nfrom picea import Tree, treeplot\nimport matplotlib.pyplot as plt\n\nnewick = '(((a,b),(c,d)),e)'\ntree = Tree.from_newick(newick)\n\nfig, (ax1, ax2) = plt.subplots(ncols = 2, figsize = (10, 4))\n\n#left-to-right layout with direct links\ntreeplot(tree, style='rectangular', ltr=True, ax=ax1)\n\n#right-to-left layout with square links\ntreeplot(tree, style='square', ltr=False, ax=ax2)\n```\n",
    "bugtrack_url": null,
    "license": "MIT",
    "summary": "A lightweight python library for working with trees and biological sequence collections",
    "version": "0.0.31",
    "project_urls": {
        "Homepage": "https://github.com/holmrenser/picea",
        "Repository": "https://github.com/holmrenser/picea"
    },
    "split_keywords": [],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "b9f385ada3008e17efad45d40c064caf7831ec131bbdafcebd44ec6b5863b19f",
                "md5": "0e828613deeac2b3c8d4961e993bad3e",
                "sha256": "05b729e9d2b1fc10d47d463d27b06f7d01aaa588b604a12938a39b4df86897a6"
            },
            "downloads": -1,
            "filename": "picea-0.0.31-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "0e828613deeac2b3c8d4961e993bad3e",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": "<3.13,>=3.10",
            "size": 21943,
            "upload_time": "2024-06-05T09:39:49",
            "upload_time_iso_8601": "2024-06-05T09:39:49.549285Z",
            "url": "https://files.pythonhosted.org/packages/b9/f3/85ada3008e17efad45d40c064caf7831ec131bbdafcebd44ec6b5863b19f/picea-0.0.31-py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "2353373ba796f49469d69e6d8e90815ebe2c883eae8b61bedbbf5b0b96c25a2a",
                "md5": "fd212ddbc39e3e4216cc9f596c3acf8e",
                "sha256": "57ca49e92ff2be839ed0ff23a7dfa154388a71ff909aa7b0bff4fac44eaf618b"
            },
            "downloads": -1,
            "filename": "picea-0.0.31.tar.gz",
            "has_sig": false,
            "md5_digest": "fd212ddbc39e3e4216cc9f596c3acf8e",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": "<3.13,>=3.10",
            "size": 21131,
            "upload_time": "2024-06-05T09:39:51",
            "upload_time_iso_8601": "2024-06-05T09:39:51.240396Z",
            "url": "https://files.pythonhosted.org/packages/23/53/373ba796f49469d69e6d8e90815ebe2c883eae8b61bedbbf5b0b96c25a2a/picea-0.0.31.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-06-05 09:39:51",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "holmrenser",
    "github_project": "picea",
    "travis_ci": false,
    "coveralls": false,
    "github_actions": true,
    "lcname": "picea"
}
        
Elapsed time: 0.77367s