| Name | pipen JSON |
| Version |
0.17.6
JSON |
| download |
| home_page | https://github.com/pwwang/pipen |
| Summary | A pipeline framework for python |
| upload_time | 2025-07-17 21:15:46 |
| maintainer | None |
| docs_url | None |
| author | pwwang |
| requires_python | <4.0,>=3.9 |
| license | MIT |
| keywords |
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
|
<div align="center">
<img src="./pipen.png" width="320px">
**A pipeline framework for python**
</div>
______________________________________________________________________
[![Pypi][6]][7] [![Github][8]][9] ![Building][10] [![Docs and API][11]][1] [![Codacy][12]][13] [![Codacy coverage][14]][13] [![Deps][5]][23]
[Documentation][1] | [ChangeLog][2] | [Examples][3] | [API][4]
## Features
- Easy to use
- Nearly zero-configuration
- Nice logging
- Highly extendable
- Cloud support naively
## Installation
```bash
pip install -U pipen
```
## Quickstart
`example.py`
```python
from pipen import Proc, Pipen, run
class P1(Proc):
"""Sort input file"""
input = "infile"
input_data = ["/tmp/data.txt"]
output = "outfile:file:intermediate.txt"
script = "cat {{in.infile}} | sort > {{out.outfile}}"
class P2(Proc):
"""Paste line number"""
requires = P1
input = "infile:file"
output = "outfile:file:result.txt"
script = "paste <(seq 1 3) {{in.infile}} > {{out.outfile}}"
# class MyPipeline(Pipen):
# starts = P1
if __name__ == "__main__":
# MyPipeline().run()
run("MyPipeline", starts=P1)
```
```shell
> echo -e "3\n2\n1" > /tmp/data.txt
> python example.py
```
```log
04-17 16:19:35 I core _____________________________________ __
04-17 16:19:35 I core ___ __ \___ _/__ __ \__ ____/__ | / /
04-17 16:19:35 I core __ /_/ /__ / __ /_/ /_ __/ __ |/ /
04-17 16:19:35 I core _ ____/__/ / _ ____/_ /___ _ /| /
04-17 16:19:35 I core /_/ /___/ /_/ /_____/ /_/ |_/
04-17 16:19:35 I core
04-17 16:19:35 I core version: 0.17.3
04-17 16:19:35 I core
04-17 16:19:35 I core ╔═══════════════════════════ MYPIPELINE ════════════════════════════╗
04-17 16:19:35 I core ║ My pipeline ║
04-17 16:19:35 I core ╚═══════════════════════════════════════════════════════════════════╝
04-17 16:19:35 I core plugins : verbose v0.14.1
04-17 16:19:35 I core # procs : 2
04-17 16:19:35 I core profile : default
04-17 16:19:35 I core outdir :
/home/pwwang/github/pipen/examples/MyPipeline-output
04-17 16:19:35 I core cache : True
04-17 16:19:35 I core dirsig : 1
04-17 16:19:35 I core error_strategy : ignore
04-17 16:19:35 I core forks : 1
04-17 16:19:35 I core lang : bash
04-17 16:19:35 I core loglevel : info
04-17 16:19:35 I core num_retries : 3
04-17 16:19:35 I core scheduler : local
04-17 16:19:35 I core submission_batch: 8
04-17 16:19:35 I core template : liquid
04-17 16:19:35 I core workdir :
/home/pwwang/github/pipen/examples/.pipen/MyPipeline
04-17 16:19:35 I core plugin_opts :
04-17 16:19:35 I core template_opts : filters={'realpath': <function realpath at
0x7fc3eba12...
04-17 16:19:35 I core : globals={'realpath': <function realpath at
0x7fc3eba12...
04-17 16:19:35 I core Initializing plugins ...
04-17 16:19:36 I core
04-17 16:19:36 I core ╭─────────────────────────────── P1 ────────────────────────────────╮
04-17 16:19:36 I core │ Sort input file │
04-17 16:19:36 I core ╰───────────────────────────────────────────────────────────────────╯
04-17 16:19:36 I core P1: Workdir:
'/home/pwwang/github/pipen/examples/.pipen/MyPipeline/P1'
04-17 16:19:36 I core P1: <<< [START]
04-17 16:19:36 I core P1: >>> ['P2']
04-17 16:19:36 I verbose P1: in.infile: /tmp/data.txt
04-17 16:19:36 I verbose P1: out.outfile:
/home/pwwang/github/pipen/examples/.pipen/MyPipeline/P1/0/output/intermediate
.txt
04-17 16:19:38 I verbose P1: Time elapsed: 00:00:02.051s
04-17 16:19:38 I core
04-17 16:19:38 I core ╭═══════════════════════════════ P2 ════════════════════════════════╮
04-17 16:19:38 I core ║ Paste line number ║
04-17 16:19:38 I core ╰═══════════════════════════════════════════════════════════════════╯
04-17 16:19:38 I core P2: Workdir:
'/home/pwwang/github/pipen/examples/.pipen/MyPipeline/P2'
04-17 16:19:38 I core P2: <<< ['P1']
04-17 16:19:38 I core P2: >>> [END]
04-17 16:19:38 I verbose P2: in.infile:
/home/pwwang/github/pipen/examples/.pipen/MyPipeline/P1/0/output/intermediate
.txt
04-17 16:19:38 I verbose P2: out.outfile:
/home/pwwang/github/pipen/examples/MyPipeline-output/P2/result.txt
04-17 16:19:41 I verbose P2: Time elapsed: 00:00:02.051s
04-17 16:19:41 I core
MYPIPELINE: 100%|██████████████████████████████| 2/2 [00:06<00:00, 0.35 procs/s]
```
```shell
> cat ./MyPipeline-output/P2/result.txt
1 1
2 2
3 3
```
## Examples
See more examples at `examples/` and a more realcase example at:
<https://github.com/pwwang/pipen-report/tree/master/example>
## Plugin gallery
Plugins make `pipen` even better.
- [`pipen-annotate`][26]: Use docstring to annotate pipen processes
- [`pipen-args`][19]: Command line argument parser for pipen
- [`pipen-board`][27]: Visualize configuration and running of pipen pipelines on the web
- [`pipen-diagram`][18]: Draw pipeline diagrams for pipen
- [`pipen-dry`][20]: Dry runner for pipen pipelines
- [`pipen-filters`][17]: Add a set of useful filters for pipen templates.
- [`pipen-lock`][25]: Process lock for pipen to prevent multiple runs at the same time.
- [`pipen-log2file`][28]: Save running logs to file for pipen
- [`pipen-poplog`][30]: Populate logs from jobs to running log of the pipeline
- [`pipen-report`][16]: Generate report for pipen
- [`pipen-runinfo`][29]: Save running information to file for pipen
- [`pipen-verbose`][15]: Add verbosal information in logs for pipen.
- [`pipen-gcs`][32]: A plugin for pipen to handle files in Google Cloud Storage.
- [`pipen-cli-init`][21]: A pipen CLI plugin to create a pipen project (pipeline)
- [`pipen-cli-ref`][31]: Make reference documentation for processes
- [`pipen-cli-require`][24]: A pipen cli plugin check the requirements of a pipeline
- [`pipen-cli-run`][22]: A pipen cli plugin to run a process or a pipeline
[1]: https://pwwang.github.io/pipen
[2]: https://pwwang.github.io/pipen/CHANGELOG
[3]: https://pwwang.github.io/pipen/examples
[4]: https://pwwang.github.io/pipen/api/pipen
[5]: https://img.shields.io/librariesio/release/pypi/pipen?style=flat-square
[6]: https://img.shields.io/pypi/v/pipen?style=flat-square
[7]: https://pypi.org/project/pipen/
[8]: https://img.shields.io/github/v/tag/pwwang/pipen?style=flat-square
[9]: https://github.com/pwwang/pipen
[10]: https://img.shields.io/github/actions/workflow/status/pwwang/pipen/build.yml?style=flat-square
[11]: https://img.shields.io/github/actions/workflow/status/pwwang/pipen/docs.yml?label=docs&style=flat-square
[12]: https://img.shields.io/codacy/grade/cf1c6c97e5c4480386a05b42dec10c6e?style=flat-square
[13]: https://app.codacy.com/gh/pwwang/pipen
[14]: https://img.shields.io/codacy/coverage/cf1c6c97e5c4480386a05b42dec10c6e?style=flat-square
[15]: https://github.com/pwwang/pipen-verbose
[16]: https://github.com/pwwang/pipen-report
[17]: https://github.com/pwwang/pipen-filters
[18]: https://github.com/pwwang/pipen-diagram
[19]: https://github.com/pwwang/pipen-args
[20]: https://github.com/pwwang/pipen-dry
[21]: https://github.com/pwwang/pipen-cli-init
[22]: https://github.com/pwwang/pipen-cli-run
[23]: https://libraries.io/github/pwwang/pipen#repository_dependencies
[24]: https://github.com/pwwang/pipen-cli-require
[25]: https://github.com/pwwang/pipen-lock
[26]: https://github.com/pwwang/pipen-annotate
[27]: https://github.com/pwwang/pipen-board
[28]: https://github.com/pwwang/pipen-log2file
[29]: https://github.com/pwwang/pipen-runinfo
[30]: https://github.com/pwwang/pipen-poplog
[31]: https://github.com/pwwang/pipen-cli-ref
[32]: https://github.com/pwwang/pipen-gcs
Raw data
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"description": "<div align=\"center\">\n <img src=\"./pipen.png\" width=\"320px\">\n\n**A pipeline framework for python**\n\n</div>\n\n______________________________________________________________________\n\n[![Pypi][6]][7] [![Github][8]][9] ![Building][10] [![Docs and API][11]][1] [![Codacy][12]][13] [![Codacy coverage][14]][13] [![Deps][5]][23]\n\n[Documentation][1] | [ChangeLog][2] | [Examples][3] | [API][4]\n\n## Features\n\n- Easy to use\n- Nearly zero-configuration\n- Nice logging\n- Highly extendable\n- Cloud support naively\n\n## Installation\n\n```bash\npip install -U pipen\n```\n\n## Quickstart\n\n`example.py`\n\n```python\nfrom pipen import Proc, Pipen, run\n\nclass P1(Proc):\n \"\"\"Sort input file\"\"\"\n input = \"infile\"\n input_data = [\"/tmp/data.txt\"]\n output = \"outfile:file:intermediate.txt\"\n script = \"cat {{in.infile}} | sort > {{out.outfile}}\"\n\nclass P2(Proc):\n \"\"\"Paste line number\"\"\"\n requires = P1\n input = \"infile:file\"\n output = \"outfile:file:result.txt\"\n script = \"paste <(seq 1 3) {{in.infile}} > {{out.outfile}}\"\n\n# class MyPipeline(Pipen):\n# starts = P1\n\nif __name__ == \"__main__\":\n # MyPipeline().run()\n run(\"MyPipeline\", starts=P1)\n```\n\n```shell\n> echo -e \"3\\n2\\n1\" > /tmp/data.txt\n> python example.py\n```\n\n```log\n04-17 16:19:35 I core _____________________________________ __\n04-17 16:19:35 I core ___ __ \\___ _/__ __ \\__ ____/__ | / /\n04-17 16:19:35 I core __ /_/ /__ / __ /_/ /_ __/ __ |/ /\n04-17 16:19:35 I core _ ____/__/ / _ ____/_ /___ _ /| /\n04-17 16:19:35 I core /_/ /___/ /_/ /_____/ /_/ |_/\n04-17 16:19:35 I core\n04-17 16:19:35 I core version: 0.17.3\n04-17 16:19:35 I core\n04-17 16:19:35 I core \u2554\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550 MYPIPELINE \u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2557\n04-17 16:19:35 I core \u2551 My pipeline \u2551\n04-17 16:19:35 I core \u255a\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u255d\n04-17 16:19:35 I core plugins : verbose v0.14.1\n04-17 16:19:35 I core # procs : 2\n04-17 16:19:35 I core profile : default\n04-17 16:19:35 I core outdir :\n /home/pwwang/github/pipen/examples/MyPipeline-output\n04-17 16:19:35 I core cache : True\n04-17 16:19:35 I core dirsig : 1\n04-17 16:19:35 I core error_strategy : ignore\n04-17 16:19:35 I core forks : 1\n04-17 16:19:35 I core lang : bash\n04-17 16:19:35 I core loglevel : info\n04-17 16:19:35 I core num_retries : 3\n04-17 16:19:35 I core scheduler : local\n04-17 16:19:35 I core submission_batch: 8\n04-17 16:19:35 I core template : liquid\n04-17 16:19:35 I core workdir :\n /home/pwwang/github/pipen/examples/.pipen/MyPipeline\n04-17 16:19:35 I core plugin_opts :\n04-17 16:19:35 I core template_opts : filters={'realpath': <function realpath at\n 0x7fc3eba12...\n04-17 16:19:35 I core : globals={'realpath': <function realpath at\n 0x7fc3eba12...\n04-17 16:19:35 I core Initializing plugins ...\n04-17 16:19:36 I core\n04-17 16:19:36 I core \u256d\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500 P1 \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\n04-17 16:19:36 I core \u2502 Sort input file \u2502\n04-17 16:19:36 I core \u2570\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n04-17 16:19:36 I core P1: Workdir:\n '/home/pwwang/github/pipen/examples/.pipen/MyPipeline/P1'\n04-17 16:19:36 I core P1: <<< [START]\n04-17 16:19:36 I core P1: >>> ['P2']\n04-17 16:19:36 I verbose P1: in.infile: /tmp/data.txt\n04-17 16:19:36 I verbose P1: out.outfile:\n /home/pwwang/github/pipen/examples/.pipen/MyPipeline/P1/0/output/intermediate\n .txt\n04-17 16:19:38 I verbose P1: Time elapsed: 00:00:02.051s\n04-17 16:19:38 I core\n04-17 16:19:38 I core \u256d\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550 P2 \u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u256e\n04-17 16:19:38 I core \u2551 Paste line number \u2551\n04-17 16:19:38 I core \u2570\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u256f\n04-17 16:19:38 I core P2: Workdir:\n '/home/pwwang/github/pipen/examples/.pipen/MyPipeline/P2'\n04-17 16:19:38 I core P2: <<< ['P1']\n04-17 16:19:38 I core P2: >>> [END]\n04-17 16:19:38 I verbose P2: in.infile:\n /home/pwwang/github/pipen/examples/.pipen/MyPipeline/P1/0/output/intermediate\n .txt\n04-17 16:19:38 I verbose P2: out.outfile:\n /home/pwwang/github/pipen/examples/MyPipeline-output/P2/result.txt\n04-17 16:19:41 I verbose P2: Time elapsed: 00:00:02.051s\n04-17 16:19:41 I core\n\n\n MYPIPELINE: 100%|\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588| 2/2 [00:06<00:00, 0.35 procs/s]\n```\n\n```shell\n> cat ./MyPipeline-output/P2/result.txt\n1 1\n2 2\n3 3\n```\n\n## Examples\n\nSee more examples at `examples/` and a more realcase example at:\n\n<https://github.com/pwwang/pipen-report/tree/master/example>\n\n## Plugin gallery\n\nPlugins make `pipen` even better.\n\n- [`pipen-annotate`][26]: Use docstring to annotate pipen processes\n- [`pipen-args`][19]: Command line argument parser for pipen\n- [`pipen-board`][27]: Visualize configuration and running of pipen pipelines on the web\n- [`pipen-diagram`][18]: Draw pipeline diagrams for pipen\n- [`pipen-dry`][20]: Dry runner for pipen pipelines\n- [`pipen-filters`][17]: Add a set of useful filters for pipen templates.\n- [`pipen-lock`][25]: Process lock for pipen to prevent multiple runs at the same time.\n- [`pipen-log2file`][28]: Save running logs to file for pipen\n- [`pipen-poplog`][30]: Populate logs from jobs to running log of the pipeline\n- [`pipen-report`][16]: Generate report for pipen\n- [`pipen-runinfo`][29]: Save running information to file for pipen\n- [`pipen-verbose`][15]: Add verbosal information in logs for pipen.\n- [`pipen-gcs`][32]: A plugin for pipen to handle files in Google Cloud Storage.\n- [`pipen-cli-init`][21]: A pipen CLI plugin to create a pipen project (pipeline)\n- [`pipen-cli-ref`][31]: Make reference documentation for processes\n- [`pipen-cli-require`][24]: A pipen cli plugin check the requirements of a pipeline\n- [`pipen-cli-run`][22]: A pipen cli plugin to run a process or a pipeline\n\n[1]: https://pwwang.github.io/pipen\n[2]: https://pwwang.github.io/pipen/CHANGELOG\n[3]: https://pwwang.github.io/pipen/examples\n[4]: https://pwwang.github.io/pipen/api/pipen\n[5]: https://img.shields.io/librariesio/release/pypi/pipen?style=flat-square\n[6]: https://img.shields.io/pypi/v/pipen?style=flat-square\n[7]: https://pypi.org/project/pipen/\n[8]: https://img.shields.io/github/v/tag/pwwang/pipen?style=flat-square\n[9]: https://github.com/pwwang/pipen\n[10]: https://img.shields.io/github/actions/workflow/status/pwwang/pipen/build.yml?style=flat-square\n[11]: https://img.shields.io/github/actions/workflow/status/pwwang/pipen/docs.yml?label=docs&style=flat-square\n[12]: https://img.shields.io/codacy/grade/cf1c6c97e5c4480386a05b42dec10c6e?style=flat-square\n[13]: https://app.codacy.com/gh/pwwang/pipen\n[14]: https://img.shields.io/codacy/coverage/cf1c6c97e5c4480386a05b42dec10c6e?style=flat-square\n[15]: https://github.com/pwwang/pipen-verbose\n[16]: https://github.com/pwwang/pipen-report\n[17]: https://github.com/pwwang/pipen-filters\n[18]: https://github.com/pwwang/pipen-diagram\n[19]: https://github.com/pwwang/pipen-args\n[20]: https://github.com/pwwang/pipen-dry\n[21]: https://github.com/pwwang/pipen-cli-init\n[22]: https://github.com/pwwang/pipen-cli-run\n[23]: https://libraries.io/github/pwwang/pipen#repository_dependencies\n[24]: https://github.com/pwwang/pipen-cli-require\n[25]: https://github.com/pwwang/pipen-lock\n[26]: https://github.com/pwwang/pipen-annotate\n[27]: https://github.com/pwwang/pipen-board\n[28]: https://github.com/pwwang/pipen-log2file\n[29]: https://github.com/pwwang/pipen-runinfo\n[30]: https://github.com/pwwang/pipen-poplog\n[31]: https://github.com/pwwang/pipen-cli-ref\n[32]: https://github.com/pwwang/pipen-gcs\n",
"bugtrack_url": null,
"license": "MIT",
"summary": "A pipeline framework for python",
"version": "0.17.6",
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