===================================
PreviseDx Esopredict PDF File Utils
===================================
Collection of Python modules for processing PreviseDx Esopredict PDF files
Usage
-----
.. code-block:: python
# from pdfrw import PdfReader, PdfWriter
from previsedx_esopredict_pdf_file_utils import EsopredictPDFWriter as Writer
from previsedx_esopredict_pdf_file_utils import constants
import yaml
import os
config_file = constants.DEFAULT_CONFIG_FILE
# Load configuration file into dictionary.
config = yaml.safe_load(open(config_file))
outdir = os.path.join(
constants.DEFAULT_OUTDIR_BASE,
os.path.basename(__file__),
constants.DEFAULT_TIMESTAMP,
)
# Create the output directory if it does not exist
os.makedirs(outdir, exist_ok=True)
# Output path for the populated PDF
outfile = os.path.join(outdir, "populated_output.pdf")
writer = Writer(
config=config,
config_file=config_file,
outdir=outdir,
outfile=outfile,
verbose=True,
)
lookup = {
"patient_name": "John Doe",
"date_of_birth": "2024-01-02",
"provider_name": "Dr. Jack Tripper",
"gender": "Male",
"medical_record_id": "12345",
"previse_lab_id": "11112",
"specimen_id": "7890",
"collection_date": "2024-01-02",
"date_received": "2024-02-02",
"date_reported": "2024-03-02",
"clinic": "Johns Hopkins Medical Center",
"address": "123 Main St",
"city_state_zip": "Baltmore, MD 12345",
"treating_provider": "Dr. Smith",
"barretts_diagnosis": "Something, Yes",
"segment_length": "1.2",
"risk_level": "High",
"range_score": "8",
"five_year_probability_of_progression": "14%",
"notes": "Some notes from provider",
}
writer.write_file(**lookup)
=======
History
=======
0.1.0 (2024-09-08)
------------------
* First release on PyPI.
Raw data
{
"_id": null,
"home_page": "https://github.com/sundaram-previsedx/previsedx-eospredict-pdf-file-utils",
"name": "previsedx-esopredict-pdf-file-utils",
"maintainer": null,
"docs_url": null,
"requires_python": ">=3.10",
"maintainer_email": null,
"keywords": "previsedx_esopredict_pdf_file_utils",
"author": "Jaideep Sundaram",
"author_email": "sundaram.previse@gmail.com",
"download_url": "https://files.pythonhosted.org/packages/39/dc/91b0871e96d05dc0257915e627c654854c0d73b4bcb2228623ab379adff4/previsedx_esopredict_pdf_file_utils-0.1.1.tar.gz",
"platform": null,
"description": "===================================\nPreviseDx Esopredict PDF File Utils\n===================================\n\nCollection of Python modules for processing PreviseDx Esopredict PDF files\n\n\nUsage\n-----\n\n.. code-block:: python\n\n # from pdfrw import PdfReader, PdfWriter\n from previsedx_esopredict_pdf_file_utils import EsopredictPDFWriter as Writer\n from previsedx_esopredict_pdf_file_utils import constants\n import yaml\n import os\n\n config_file = constants.DEFAULT_CONFIG_FILE\n\n # Load configuration file into dictionary.\n config = yaml.safe_load(open(config_file))\n\n outdir = os.path.join(\n constants.DEFAULT_OUTDIR_BASE,\n os.path.basename(__file__),\n constants.DEFAULT_TIMESTAMP,\n )\n\n # Create the output directory if it does not exist\n os.makedirs(outdir, exist_ok=True)\n\n # Output path for the populated PDF\n outfile = os.path.join(outdir, \"populated_output.pdf\")\n\n writer = Writer(\n config=config,\n config_file=config_file,\n outdir=outdir,\n outfile=outfile,\n verbose=True,\n )\n\n lookup = {\n \"patient_name\": \"John Doe\",\n \"date_of_birth\": \"2024-01-02\",\n \"provider_name\": \"Dr. Jack Tripper\",\n \"gender\": \"Male\",\n \"medical_record_id\": \"12345\",\n \"previse_lab_id\": \"11112\",\n \"specimen_id\": \"7890\",\n \"collection_date\": \"2024-01-02\",\n \"date_received\": \"2024-02-02\",\n \"date_reported\": \"2024-03-02\",\n \"clinic\": \"Johns Hopkins Medical Center\",\n \"address\": \"123 Main St\",\n \"city_state_zip\": \"Baltmore, MD 12345\",\n \"treating_provider\": \"Dr. Smith\",\n \"barretts_diagnosis\": \"Something, Yes\",\n \"segment_length\": \"1.2\",\n \"risk_level\": \"High\",\n \"range_score\": \"8\",\n \"five_year_probability_of_progression\": \"14%\",\n \"notes\": \"Some notes from provider\",\n }\n\n writer.write_file(**lookup)\n\n\n=======\nHistory\n=======\n\n0.1.0 (2024-09-08)\n------------------\n\n* First release on PyPI.\n\n\n",
"bugtrack_url": null,
"license": null,
"summary": "Collection of Python modules for processing PreviseDx Esopredict PDF final report files.",
"version": "0.1.1",
"project_urls": {
"Homepage": "https://github.com/sundaram-previsedx/previsedx-eospredict-pdf-file-utils"
},
"split_keywords": [
"previsedx_esopredict_pdf_file_utils"
],
"urls": [
{
"comment_text": null,
"digests": {
"blake2b_256": "a1a58de768621cd5f9be2faaaec4c78f6cb7171f1d2b0a4358a4f9b36afb3237",
"md5": "45afe85cc12f3dc3f1f6baefdbf57761",
"sha256": "fc89f34b6d1ba8354013bbf85548c613ed57e7b361210324fe76b55c41a85ca7"
},
"downloads": -1,
"filename": "previsedx_esopredict_pdf_file_utils-0.1.1-py3-none-any.whl",
"has_sig": false,
"md5_digest": "45afe85cc12f3dc3f1f6baefdbf57761",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": ">=3.10",
"size": 12182,
"upload_time": "2025-02-15T14:03:00",
"upload_time_iso_8601": "2025-02-15T14:03:00.507196Z",
"url": "https://files.pythonhosted.org/packages/a1/a5/8de768621cd5f9be2faaaec4c78f6cb7171f1d2b0a4358a4f9b36afb3237/previsedx_esopredict_pdf_file_utils-0.1.1-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": null,
"digests": {
"blake2b_256": "39dc91b0871e96d05dc0257915e627c654854c0d73b4bcb2228623ab379adff4",
"md5": "7824b326019a1ada354d509e0e3841f8",
"sha256": "249812af35d7f278a74c811c06ded40407b7699beb2c633f15cf4b40c642e774"
},
"downloads": -1,
"filename": "previsedx_esopredict_pdf_file_utils-0.1.1.tar.gz",
"has_sig": false,
"md5_digest": "7824b326019a1ada354d509e0e3841f8",
"packagetype": "sdist",
"python_version": "source",
"requires_python": ">=3.10",
"size": 16144,
"upload_time": "2025-02-15T14:03:02",
"upload_time_iso_8601": "2025-02-15T14:03:02.274211Z",
"url": "https://files.pythonhosted.org/packages/39/dc/91b0871e96d05dc0257915e627c654854c0d73b4bcb2228623ab379adff4/previsedx_esopredict_pdf_file_utils-0.1.1.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2025-02-15 14:03:02",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "sundaram-previsedx",
"github_project": "previsedx-eospredict-pdf-file-utils",
"github_not_found": true,
"lcname": "previsedx-esopredict-pdf-file-utils"
}
JSON
