# Get cited by information from Pubmed.
## Installation
```bash
python3 -m pip install pubmed-cited-by
```
## Usage
> set API_KEY in environment variable [***recommend***]
> see more: https://account.ncbi.nlm.nih.gov/settings/#api-key
```bash
echo NCBI_API_KEY=<your_api_key> >> ~/.bashrc
```
### Use in Python
```python
from pubmed_cited_by.core import PubmedCitedBy
pcb = PubmedCitedBy()
result = pcb.get_cited_by_data(1)
print(result)
pmids = [1, 2, 3]
data = pcb.get_cited_by(pmids)
for item in data:
print(item)
```
### Use in CMD
```bash
pubmed_cited_by --help
pubmed_cited_by 1 2 3
pubmed_cited_by pmid.list
pubmed_cited_by 1 2 3 -o output.xlsx
pubmed_cited_by 1 2 3 -o output.csv
pubmed_cited_by 1 2 3 -o output.tsv
pubmed_cited_by 1 2 3 -o output.json
pubmed_cited_by 1 2 3 -o output.jl
```
Raw data
{
"_id": null,
"home_page": "https://github.com/suqingdong/pubmed_cited_by",
"name": "pubmed-cited-by",
"maintainer": null,
"docs_url": null,
"requires_python": null,
"maintainer_email": null,
"keywords": null,
"author": "suqingdong",
"author_email": "suqingdong1114@gmail.com",
"download_url": "https://files.pythonhosted.org/packages/5a/0c/72e20aec6c29911cf44485a50262421dc7cd7fde1f2a878e7c51e7ed4491/pubmed_cited_by-1.0.0.tar.gz",
"platform": null,
"description": "# Get cited by information from Pubmed.\n\n## Installation\n\n```bash\npython3 -m pip install pubmed-cited-by\n```\n\n## Usage\n\n> set API_KEY in environment variable [***recommend***]\n\n> see more: https://account.ncbi.nlm.nih.gov/settings/#api-key\n\n```bash\necho NCBI_API_KEY=<your_api_key> >> ~/.bashrc\n```\n\n### Use in Python\n\n```python\nfrom pubmed_cited_by.core import PubmedCitedBy\n\npcb = PubmedCitedBy()\n\nresult = pcb.get_cited_by_data(1)\nprint(result)\n\npmids = [1, 2, 3]\ndata = pcb.get_cited_by(pmids)\nfor item in data:\n print(item)\n```\n\n### Use in CMD\n\n```bash\n\npubmed_cited_by --help\n\npubmed_cited_by 1 2 3\npubmed_cited_by pmid.list\n\npubmed_cited_by 1 2 3 -o output.xlsx\npubmed_cited_by 1 2 3 -o output.csv\npubmed_cited_by 1 2 3 -o output.tsv\npubmed_cited_by 1 2 3 -o output.json\npubmed_cited_by 1 2 3 -o output.jl\n```\n\n\n",
"bugtrack_url": null,
"license": "MIT License",
"summary": "Get cited by information from Pubmed",
"version": "1.0.0",
"project_urls": {
"Homepage": "https://github.com/suqingdong/pubmed_cited_by"
},
"split_keywords": [],
"urls": [
{
"comment_text": "",
"digests": {
"blake2b_256": "d3587083ddaf3f280477d745d7d8f52773aaf05064339ac16aa47b51ca643210",
"md5": "94230ed3b89390195f28264115e34dbe",
"sha256": "020bfe7e01912339ca487fe3865a6b59b135a1f8d5fa191c7f94391905b33019"
},
"downloads": -1,
"filename": "pubmed_cited_by-1.0.0-py3-none-any.whl",
"has_sig": false,
"md5_digest": "94230ed3b89390195f28264115e34dbe",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": null,
"size": 5103,
"upload_time": "2024-12-09T09:12:54",
"upload_time_iso_8601": "2024-12-09T09:12:54.601272Z",
"url": "https://files.pythonhosted.org/packages/d3/58/7083ddaf3f280477d745d7d8f52773aaf05064339ac16aa47b51ca643210/pubmed_cited_by-1.0.0-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": "",
"digests": {
"blake2b_256": "5a0c72e20aec6c29911cf44485a50262421dc7cd7fde1f2a878e7c51e7ed4491",
"md5": "dc91d15302778ba0f97d2a2402ee42f1",
"sha256": "7b3e8ac3ef23ad8fd70f7f086bd870868954fc6fe5ecdda0d6f695ec218b9b37"
},
"downloads": -1,
"filename": "pubmed_cited_by-1.0.0.tar.gz",
"has_sig": false,
"md5_digest": "dc91d15302778ba0f97d2a2402ee42f1",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 4083,
"upload_time": "2024-12-09T09:12:56",
"upload_time_iso_8601": "2024-12-09T09:12:56.472920Z",
"url": "https://files.pythonhosted.org/packages/5a/0c/72e20aec6c29911cf44485a50262421dc7cd7fde1f2a878e7c51e7ed4491/pubmed_cited_by-1.0.0.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2024-12-09 09:12:56",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "suqingdong",
"github_project": "pubmed_cited_by",
"travis_ci": false,
"coveralls": false,
"github_actions": false,
"requirements": [
{
"name": "click",
"specs": []
},
{
"name": "loguru",
"specs": []
},
{
"name": "openpyxl",
"specs": []
},
{
"name": "webrequests",
"specs": []
}
],
"lcname": "pubmed-cited-by"
}
JSON
