pubmed-xml

Name	pubmed-xml JSON
Version	1.0.2 JSON
	download
home_page	https://github.com/suqingdong/pubmed_xml
Summary	Pubmed XML Parser
upload_time	2025-01-10 02:52:16
maintainer	None
docs_url	None
author	suqingdong
requires_python	None
license	MIT License
keywords
VCS
bugtrack_url
requirements	lxml click w3lib requests simple-loggers
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # PubMed XML Parser

## Installation
```bash
python3 -m pip install pubmed_xml
```

## Usage
### CommandLine
```bash
pubmed_xml --help

# parse single
pubmed_xml 30003000

# parse batch
pubmed_xml 30003000,30003001,30003002

# parse multiple
pubmed_xml 30003000 30003001 30003002

# parse from xml file
pubmed_xml tests/pubmed22n1543.xml.gz -o out.jl

# save file
pubmed_xml 30003000,30003001,30003002 -o out.jl
```

### Python
```python
from pubmed_xml import Pubmed_XML_Parser

pubmed = Pubmed_XML_Parser()

for article in pubmed.parse('30003000,30003001,30003002'):
    print(article)        # Article<30003002>
    print(article.data)   # dict object
    print(article.to_json(indent=2))   # json string
    print(article.pmid, article.title, article.abstract) # by attribute
    print(article['pmid'], article['title'], article['abstract']) # by key
```



            

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