pybigtools


Namepybigtools JSON
Version 0.2.2 PyPI version JSON
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home_pageNone
SummaryPython bindings to the Bigtools Rust library for high-performance BigWig and BigBed I/O
upload_time2024-11-04 04:16:34
maintainerNone
docs_urlNone
authorJack <jackh726@gmail.com>
requires_pythonNone
licenseMIT
keywords bigwig bigbed bbi bioinformatics genomics kent ucsc rust
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            The `pybigtools` python package wraps the `bigtools` Rust library and allows effecient reading and writing of bigWig and bigBed files.

## Documenation

Documentation is available on [readthedocs](https://bigtools.readthedocs.io/en/latest/pybigtools.html).

## Examples

(Replace `<path>` with the path to a bigWig file or url)

### Iterator of intervals

```python
import pybigtools
b = pybigtools.open(<path>)
i = b.intervals("chr1")
print(next(i))
```

### Numpy array of values

```python
import pybigtools
b = pybigtools.open(<path>)
a = b.values("chr1")
print(a.shape)
```

### Open a file-like object

```python
import pybigtools
b = pybigtools.open(open(<path>, 'rb'))
a = b.values("chr1")
print(a.shape)
```


            

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