pydra-compose-bidsapp


Namepydra-compose-bidsapp JSON
Version 0.2.2 PyPI version JSON
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home_pageNone
SummaryPydra compose package for wrapping BIDS Apps in Pydra tasks
upload_time2025-09-10 04:44:55
maintainerNone
docs_urlNone
authorNone
requires_python>=3.11
licenseCopyright 2021 Nipype developers Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.
keywords pydra
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requirements No requirements were recorded.
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coveralls test coverage No coveralls.
            # Pydra-compose-bidsapp plugin

Pydra-compose-bidsapp is a plugin package for the [Pydra dataflow engine](https://nipype.github.io/pydra),
which adds the feature to wrap up [BIDS Apps](https://bids-apps.neuroimaging.io/) into
Pydra task classes that take input files, stores them in a BIDS dataset created on the
fly, runs the BIDS App on them, then extracts the files into the tasks outputs. It can
be useful when running BIDS app on non-BIDS structured data (e.g. XNAT or LORIS repositories).

## For developers

Install repo in developer mode from the source directory. It is also useful to
install pre-commit to take care of styling via [black](https://black.readthedocs.io/):

```bash
python3 -m pip install -e '.[dev]'
pre-commit install
```

            

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