| Name | pydra-freesurfer JSON |
| Version |
0.0.10
JSON |
| download |
| home_page | |
| Summary | Pydra tasks for FreeSurfer |
| upload_time | 2023-02-12 00:10:45 |
| maintainer | |
| docs_url | None |
| author | |
| requires_python | >=3.7 |
| license | |
| keywords |
freesurfer
neuroimaging
pydra
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# pydra-freesurfer
[](https://pypi.org/project/pydra-freesurfer)
[](https://pypi.org/project/pydra-freesurfer)
---
Pydra tasks for FreeSurfer.
[Pydra][pydra] is a dataflow engine
which provides a set of lightweight abstractions
for DAG construction, manipulation, and distributed execution.
[FreeSurfer][freesurfer] is a neuroimaging toolkit
for processing, analyzing, and visualizing human brain MR images.
This project exposes some of FreeSurfer's utilities as Pydra tasks
to facilitate their integration into more advanced processing workflows.
**Table of contents**
- [Installation](#installation)
- [Available interfaces](#available-interfaces)
- [Development](#development)
- [Licensing](#licensing)
## Installation
```console
pip install pydra-freesurfer
```
## Available interfaces
- gtmseg
- mri_convert
- mri_label2vol
- mri_surf2surf
- mri_vol2vol
- mris_anatomical_stats
- mris_ca_label
- mris_ca_train
- mris_expand
- mris_preproc
- recon-all
- tkregister2
## Development
This project is managed with [Hatch][hatch]:
```console
pipx install hatch
```
To run the test suite:
```console
hatch run test:no-cov
```
To fix linting issues:
```console
hatch run lint:fix
```
To check the documentation:
```console
hatch run docs:serve --open-browser
```
## Licensing
This project is released under the terms of the [Apache License, Version 2.0][license].
[pydra]: https://nipype.github.io/pydra
[freesurfer]: https://surfer.nmr.mgh.harvard.edu
[hatch]: https://hatch.pypa.io
[license]: https://opensource.org/licenses/Apache-2.0
Raw data
{
"_id": null,
"home_page": "",
"name": "pydra-freesurfer",
"maintainer": "",
"docs_url": null,
"requires_python": ">=3.7",
"maintainer_email": "",
"keywords": "freesurfer,neuroimaging,pydra",
"author": "",
"author_email": "Ghislain Vaillant <ghislain.vaillant@icm-institute.org>",
"download_url": "https://files.pythonhosted.org/packages/a8/c5/345508b306861ad1576fb7148acc6123b857ee94a7f16087ed770341d856/pydra_freesurfer-0.0.10.tar.gz",
"platform": null,
"description": "# pydra-freesurfer\n\n[](https://pypi.org/project/pydra-freesurfer)\n[](https://pypi.org/project/pydra-freesurfer)\n\n---\n\nPydra tasks for FreeSurfer.\n\n[Pydra][pydra] is a dataflow engine\nwhich provides a set of lightweight abstractions\nfor DAG construction, manipulation, and distributed execution.\n\n[FreeSurfer][freesurfer] is a neuroimaging toolkit\nfor processing, analyzing, and visualizing human brain MR images.\n\nThis project exposes some of FreeSurfer's utilities as Pydra tasks\nto facilitate their integration into more advanced processing workflows.\n\n**Table of contents**\n\n- [Installation](#installation)\n- [Available interfaces](#available-interfaces)\n- [Development](#development)\n- [Licensing](#licensing)\n\n## Installation\n\n```console\npip install pydra-freesurfer\n```\n\n## Available interfaces\n\n- gtmseg\n- mri_convert\n- mri_label2vol\n- mri_surf2surf\n- mri_vol2vol\n- mris_anatomical_stats\n- mris_ca_label\n- mris_ca_train\n- mris_expand\n- mris_preproc\n- recon-all\n- tkregister2\n\n## Development\n\nThis project is managed with [Hatch][hatch]:\n\n```console\npipx install hatch\n```\n\nTo run the test suite:\n\n```console\nhatch run test:no-cov\n```\n\nTo fix linting issues:\n\n```console\nhatch run lint:fix\n```\n\nTo check the documentation:\n\n```console\nhatch run docs:serve --open-browser\n```\n\n## Licensing\n\nThis project is released under the terms of the [Apache License, Version 2.0][license].\n\n[pydra]: https://nipype.github.io/pydra\n[freesurfer]: https://surfer.nmr.mgh.harvard.edu\n[hatch]: https://hatch.pypa.io\n[license]: https://opensource.org/licenses/Apache-2.0\n",
"bugtrack_url": null,
"license": "",
"summary": "Pydra tasks for FreeSurfer",
"version": "0.0.10",
"split_keywords": [
"freesurfer",
"neuroimaging",
"pydra"
],
"urls": [
{
"comment_text": "",
"digests": {
"blake2b_256": "6cd9b1adb6e6bf3ac4daea586ad4af781fdbb29bcd7dd3347a241a8fc440adc1",
"md5": "1ca55f805d978dd49f32541ba52a3fc6",
"sha256": "e29aa63a7bb8ce93392f681ee47f810b3dee631fc9adb65ed1d64a9df0a4d00b"
},
"downloads": -1,
"filename": "pydra_freesurfer-0.0.10-py3-none-any.whl",
"has_sig": false,
"md5_digest": "1ca55f805d978dd49f32541ba52a3fc6",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": ">=3.7",
"size": 28898,
"upload_time": "2023-02-12T00:10:42",
"upload_time_iso_8601": "2023-02-12T00:10:42.933587Z",
"url": "https://files.pythonhosted.org/packages/6c/d9/b1adb6e6bf3ac4daea586ad4af781fdbb29bcd7dd3347a241a8fc440adc1/pydra_freesurfer-0.0.10-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": "",
"digests": {
"blake2b_256": "a8c5345508b306861ad1576fb7148acc6123b857ee94a7f16087ed770341d856",
"md5": "90ead963fba0508e4d0a211137e0a60e",
"sha256": "74e39dd524d3fc3d38dd004ffbee86491280a7e05d8b97f62033e451a83cb41c"
},
"downloads": -1,
"filename": "pydra_freesurfer-0.0.10.tar.gz",
"has_sig": false,
"md5_digest": "90ead963fba0508e4d0a211137e0a60e",
"packagetype": "sdist",
"python_version": "source",
"requires_python": ">=3.7",
"size": 20648,
"upload_time": "2023-02-12T00:10:45",
"upload_time_iso_8601": "2023-02-12T00:10:45.065447Z",
"url": "https://files.pythonhosted.org/packages/a8/c5/345508b306861ad1576fb7148acc6123b857ee94a7f16087ed770341d856/pydra_freesurfer-0.0.10.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2023-02-12 00:10:45",
"github": false,
"gitlab": false,
"bitbucket": false,
"lcname": "pydra-freesurfer"
}
