pyggseqlogo

Name	pyggseqlogo JSON
Version	1.1.0 JSON
	download
home_page	https://github.com/caotianze/pyggseqlogo
Summary	Python version of ggseqlogo. Based on plotnine (Python version of ggplot2). A derivative of plotnineSeqSuite.
upload_time	2024-03-08 05:33:01
maintainer
docs_url	None
author	Cao Tianze
requires_python	>=3.11
license	MIT
keywords	ggplot2 plotnine ggseqlogo sequence logo
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # Pyggseqlogo
Python version of [ggseqlogo](https://github.com/omarwagih/ggseqlogo). Based on [plotnine](https://github.com/has2k1/plotnine/) (Python version of ggplot2). A derivative of [plotnineSeqSuite](https://github.com/caotianze/plotnineseqsuite/).
## Cite this work
Cao, T., Li, Q., Huang, Y. et al. plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style. BMC Genomics 24, 585 (2023). https://doi.org/10.1186/s12864-023-09677-8
## Installation
`pip install pyggseqlogo`
## Getting Started
```Python
from plotnine import ggplot
from plotnineseqsuite import geom_logo
from plotnineseqsuite.data import seqs_dna
from pyggseqlogo import ggseqlogo, theme_logo
```
The code is based on plotnineSeqSuite.
```Python
ggplot() + geom_logo(data=seqs_dna['MA0001.1']) + theme_logo()
```
![https://caotianze.github.io/pyggseqlogo/started_1.png](https://caotianze.github.io/pyggseqlogo/started_1.png)    
Pyggseqlogo provides a wrapper function for the above code.
```Python
ggseqlogo(seqs_dna['MA0001.1'])
```
![https://caotianze.github.io/pyggseqlogo/started_2.png](https://caotianze.github.io/pyggseqlogo/started_2.png)    
facet_wrap
```Python
ggseqlogo(seqs_dna, ncol=4)
```
![https://caotianze.github.io/pyggseqlogo/started_3.png](https://caotianze.github.io/pyggseqlogo/started_3.png)
## Where to go next
If you want to draw more complex sequence logos or other sequence-related diagrams, we recommend visiting the [plotnineSeqSuite homepage](https://github.com/caotianze/plotnineseqsuite/) for details.

            

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    "description": "# Pyggseqlogo\r\nPython version of [ggseqlogo](https://github.com/omarwagih/ggseqlogo). Based on [plotnine](https://github.com/has2k1/plotnine/) (Python version of ggplot2). A derivative of [plotnineSeqSuite](https://github.com/caotianze/plotnineseqsuite/).\r\n## Cite this work\r\nCao, T., Li, Q., Huang, Y. et al. plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style. BMC Genomics 24, 585 (2023). https://doi.org/10.1186/s12864-023-09677-8\r\n## Installation\r\n`pip install pyggseqlogo`\r\n## Getting Started\r\n```Python\r\nfrom plotnine import ggplot\r\nfrom plotnineseqsuite import geom_logo\r\nfrom plotnineseqsuite.data import seqs_dna\r\nfrom pyggseqlogo import ggseqlogo, theme_logo\r\n```\r\nThe code is based on plotnineSeqSuite.\r\n```Python\r\nggplot() + geom_logo(data=seqs_dna['MA0001.1']) + theme_logo()\r\n```\r\n![https://caotianze.github.io/pyggseqlogo/started_1.png](https://caotianze.github.io/pyggseqlogo/started_1.png)    \r\nPyggseqlogo provides a wrapper function for the above code.\r\n```Python\r\nggseqlogo(seqs_dna['MA0001.1'])\r\n```\r\n![https://caotianze.github.io/pyggseqlogo/started_2.png](https://caotianze.github.io/pyggseqlogo/started_2.png)    \r\nfacet_wrap\r\n```Python\r\nggseqlogo(seqs_dna, ncol=4)\r\n```\r\n![https://caotianze.github.io/pyggseqlogo/started_3.png](https://caotianze.github.io/pyggseqlogo/started_3.png)\r\n## Where to go next\r\nIf you want to draw more complex sequence logos or other sequence-related diagrams, we recommend visiting the [plotnineSeqSuite homepage](https://github.com/caotianze/plotnineseqsuite/) for details.\r\n",
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