| Name | pymef JSON |
| Version |
1.4.3
JSON |
| download |
| home_page | |
| Summary | Pymef is a wrapper library for Multiscale Electrophysiology Format developed by MSEL laboratory. |
| upload_time | 2024-02-23 20:32:33 |
| maintainer | |
| docs_url | None |
| author | |
| requires_python | >=3.6 |
| license | Apache-2.0 |
| keywords |
mef
mayo
electrophysiology
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
[](https://pymef.readthedocs.io/en/latest/?badge=latest)
Pymef
====
Pymef is a wrapper library for Multiscale Electrophysiology Format developed by
[MSEL laboratory](http://msel.mayo.edu/).
Currently available for all major distributions (Linux, Mac OS, Windows). Only python 3 is supported.
Mef v 3.0 basic features
------------------------
- Support for parallelisation of signal processing
- Data compression
- Data encryption
- Real-time read/write, failure when writing file leaves intact valid files
- CRC functionality to detect data corruption
- Support for time discontinuities
- Support for time series and video channels
Wrapper features
----------------
- MEF3 files write/read
- Convenience functions to easily read data and metadata for multiple channels
Installation
------------
To install please use:
```bash
pip install pymef
```
To install from source:
```bash
python setup.py install
```
Usage
------------
```
from pymef.mef_session import MefSession
session_path = '/path/to/session.mefd'
password = 'mef_password' // leave blank if no password
# read session metadata
ms = MefSession(session_path, password)
# read data of a single channel from beginning to end
data = ms.read_ts_channels_sample('Ch01', [[None, None]])
# read data of multiple channels from beginning to end
data = ms.read_ts_channels_sample(['Ch01', 'Ch05'], [[None, None]])
```
Documentation
-------------
The MEF3 specification can be found [here](https://osf.io/e3sf9/download).
The PyMef documentation can be found [here](https://pymef.readthedocs.io).
Support
-------
Please report problems to jan.cimbalnik@fnusa.cz.
License
-------
Pymef is licensed under the Apache software license. See [LICENSE.txt](./LICENSE.txt) for details.
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"description": "\n[](https://pymef.readthedocs.io/en/latest/?badge=latest)\n\nPymef\n====\n\nPymef is a wrapper library for Multiscale Electrophysiology Format developed by \n[MSEL laboratory](http://msel.mayo.edu/).\n\nCurrently available for all major distributions (Linux, Mac OS, Windows). Only python 3 is supported.\n\n\nMef v 3.0 basic features\n------------------------\n\n- Support for parallelisation of signal processing\n- Data compression\n- Data encryption\n- Real-time read/write, failure when writing file leaves intact valid files\n- CRC functionality to detect data corruption\n- Support for time discontinuities\n- Support for time series and video channels\n\nWrapper features\n----------------\n\n- MEF3 files write/read\n- Convenience functions to easily read data and metadata for multiple channels\n\nInstallation\n------------\n\nTo install please use:\n```bash\npip install pymef\n```\n\nTo install from source:\n```bash\npython setup.py install\n```\n\nUsage\n------------\n```\nfrom pymef.mef_session import MefSession\n\nsession_path = '/path/to/session.mefd'\npassword = 'mef_password' // leave blank if no password\n\n# read session metadata\nms = MefSession(session_path, password)\n\n# read data of a single channel from beginning to end\ndata = ms.read_ts_channels_sample('Ch01', [[None, None]])\n\n# read data of multiple channels from beginning to end\ndata = ms.read_ts_channels_sample(['Ch01', 'Ch05'], [[None, None]])\n```\n\nDocumentation\n-------------\n\nThe MEF3 specification can be found [here](https://osf.io/e3sf9/download).\nThe PyMef documentation can be found [here](https://pymef.readthedocs.io).\n\nSupport\n-------\n\nPlease report problems to jan.cimbalnik@fnusa.cz.\n\nLicense\n-------\n\nPymef is licensed under the Apache software license. See [LICENSE.txt](./LICENSE.txt) for details.\n",
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