pyphetools

Name	pyphetools JSON
Version	0.9.117 JSON
	download
home_page	None
Summary	Generate and work with GA4GH phenopackets
upload_time	2025-01-19 11:28:10
maintainer	None
docs_url	None
author	None
requires_python	>=3.8
license	MIT License Copyright (c) 2023, The Monarch Initiative Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
keywords	global alliance for genomics and health ga4gh phenopacket schema human phenotype ontology ga4gh hpo
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            [![CI](https://github.com/monarch-initiative/pyphetools/workflows/CI/badge.svg)](https://github.com/monarch-initiative/pyphetools/actions/workflows/python_ci.yml)

# pyphetools
Python Phenopacket Tools

This package currently is designed to test how to use the Python version of the phenopackets package together with pandas to create phenopackets from typical supplemental tables.

Development goals include making builder code similar to the Java package to create valid phenopackets and to perform JSON Schema-based validation.


## Documentation

See the tutorial and detailed documentation [here](https://monarch-initiative.github.io/pyphetools).

## PyPI

We have made the package available in the Python Package Index (pypi) at [pyphetools](https://pypi.org/project/pyphetools/).

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